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Report for CCDS37211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37211.1 Public Mus musculus 15 Slc11a2 23 108 98 CCDS HistoryNCBI Gene:18174Re-query CCDS DB by CCDS ID:37211.1Re-query CCDS DB by GeneID:18174See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023774.11 ENSMUSP00000023774.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023774.11Link to Ensembl Protein Viewer:ENSMUSP00000023774.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023774Re-query CCDS DB by Protein ID:ENSMUSP00000023774
Original member Current member NCBI NM_008732.2 NP_032758.2 Accepted alive Link to Nucleotide Sequence:NM_008732.2Link to Protein Sequence:NP_032758.2Re-query CCDS DB by Nucleotide ID:NM_008732Re-query CCDS DB by Protein ID:NP_032758Link to BLAST:NP_032758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032758.2 568 P49282-1 568 100% 0 0

Chromosomal Locations for CCDS 37211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100389084 100389161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100395270 100395323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100397664 100397817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100399414 100399487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100401268 100401417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100401552 100401671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100402298 100402384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100403181 100403339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100403808 100403963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100405576 100405643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100405744 100405814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100406280 100406386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100408101 100408220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100409200 100409325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100410083 100410231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100412191 100412224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGTGTTGGATCCTAAAGAAAAGATGCCAGACGATGGCGCTTCTGGGGACCATGGAGACTCTGCCAGCC
TTGGCGCCATCAACCCTGCCTACAGCAACTCATCCCTCCCACATTCCACTGGAGACTCTGAGGAGCCCTT
CACCACCTACTTTGATGAGAAAATCCCCATTCCTGAGGAGGAGTACTCTTGTTTTAGCTTTCGTAAACTC
TGGGCGTTCACGGGGCCTGGCTTTCTTATGAGCATTGCCTACCTAGACCCAGGAAACATCGAATCTGATT
TGCAGTCTGGAGCAGTGGCTGGATTTAAGCTGCTCTGGGTGCTCCTCTTGGCCACCATTGTGGGGCTGCT
GCTCCAGCGCCTTGCAGCGAGACTTGGAGTGGTCACCGGCTTGCATCTTGCTGAAGTATGTCACCGTCAG
TATCCCAAGGTCCCACGGATCATCCTGTGGCTGATGGTGGAGTTGGCAATCATTGGTTCTGACATGCAGG
AAGTCATTGGCTCAGCCATCGCCATCAATCTCCTGTCTGCAGGAAGGGTCCCCCTGTGGGGCGGAGTCCT
CATCACCATCGCAGACACTTTTGTGTTTCTTTTTTTGGACAAATATGGCTTGCGGAAGCTGGAAGCGTTT
TTTGGCTTTCTCATCACTATCATGGCCCTCACGTTTGGATATGAGTACATTACAGTGAAGCCCAGCCAGA
GCCAAGTACTCAGGGGCATGTTCGTGCCGTCCTGTCCAGGGTGCCGCACCCCTCAGGTGGAGCAGGCGGT
GGGCATCGTGGGAGCTGTGATCATGCCGCACAACATGTACCTGCATTCTGCCTTAGTCAAGTCTAGACAG
GTGAATCGGGCCAATAAGCAGGAAGTGCGGGAAGCCAATAAGTACTTCTTCATCGAGTCCTGCATCGCGC
TCTTTGTTTCCTTCATCATCAATGTCTTTGTCGTGTCCGTCTTTGCTGAAGCATTTTTTGAGAAAACCAA
CAAGCAGGTGGTTGAAGTCTGCAAAAATAACAGCAGCCCCCATGCTGACCTCTTTCCCAGTGACAACTCT
ACTCTGGCTGTGGACATCTACAAAGGGGGTGTTGTGCTTGGATGTTACTTCGGGCCTGCAGCTCTCTACA
TCTGGGCAGTGGGGATCCTGGCTGCCGGTCAGAGCTCCACCATGACTGGAACCTATTCTGGCCAGTTTGT
CATGGAGGGATTCCTGAACCTAAAATGGTCGCGCTTTGCCCGAGTGATCCTGACCCGGTCTATCGCCATC
ATCCCCACCCTGCTCGTCGCTGTCTTCCAGGATGTGGAGCACCTAACGGGGATGAATGACTTCCTGAATG
TCCTGCAGAGCTTACAGCTCCCCTTTGCTCTCATACCCATCCTCACGTTCACAAGCCTGCGGCCAGTGAT
GAGTGAGTTTTCCAATGGAATAGGCTGGAGGATTGCCGGTGGCATCCTGGTCCTGATCGTCTGCTCCATC
AACATGTACTTTGTAGTGGTTTATGTCCAGGAGCTAGGGCATGTGGCACTCTATGTGGTGGCTGCAGTGG
TTAGCGTGGCTTATTTGACCTTTGTGTTCTACTTGGGTTGGCAGTGTTTGATTGCATTGGGTCTGTCTTT
CCTGGACTGTGGACGCTCGTACCGCCTGGGACTGACCGCTCAGCCTGAACTCTATCTTCTGAACACCGTG
GATGCTGACTCAGTGGTGTCCAGATGA

Translation (568 aa):
MVLDPKEKMPDDGASGDHGDSASLGAINPAYSNSSLPHSTGDSEEPFTTYFDEKIPIPEEEYSCFSFRKL
WAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQ
YPKVPRIILWLMVELAIIGSDMQEVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAF
FGFLITIMALTFGYEYITVKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQ
VNRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVVEVCKNNSSPHADLFPSDNS
TLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVILTRSIAI
IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSEFSNGIGWRIAGGILVLIVCSI
NMYFVVVYVQELGHVALYVVAAVVSVAYLTFVFYLGWQCLIALGLSFLDCGRSYRLGLTAQPELYLLNTV
DADSVVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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