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Report for CCDS37208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37208.1 Public Mus musculus 15 Larp4 23 108 98 CCDS HistoryNCBI Gene:207214Re-query CCDS DB by CCDS ID:37208.1Re-query CCDS DB by GeneID:207214See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100206.3 ENSMUSP00000097780.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100206.3Link to Ensembl Protein Viewer:ENSMUSP00000097780.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100206Re-query CCDS DB by Protein ID:ENSMUSP00000097780
Original member Current member NCBI NM_001024526.2 NP_001019697.2 Accepted alive Link to Nucleotide Sequence:NM_001024526.2Link to Protein Sequence:NP_001019697.2Re-query CCDS DB by Nucleotide ID:NM_001024526Re-query CCDS DB by Protein ID:NP_001019697Link to BLAST:NP_001019697.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019697.2 719 Q8BWW4 719 99.8609% 0 1

Chromosomal Locations for CCDS 37208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99972966 99972983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99984920 99985055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99986038 99986193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99987403 99987478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99990293 99990429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99991725 99991828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99993323 99993433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99994664 99994717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99996467 99996676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99997373 99997476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100000836 100001048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100001802 100001850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100005241 100005402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100007607 100007728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100010292 100010460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100011836 100012174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGTTGCTCTTCGTTGAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAA
TTCCTTCTGGAAATCCGGATGGCACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACATCTGG
ATCTCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCA
TCTTGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAG
ACCTGAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGA
ATGTCTGAAAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCT
CAAATGGATAGTGATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTA
CAAATACAGATTTAATTCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAA
GGTGAGACCAAGTCATAAGCGATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAA
GTGAAAGCTTTGTTTAAAAATGAAAACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACT
GGTACATCACTTTCCAGTCAGACACAGATGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAAC
ATTTCAGGGCAAGCCAATCATGGCAAGGATAAAAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGA
TTAATGGATTCTAGTATGTATACTCAACCTATTCAGACTCCTACCCAATATCCCTCACCAGTCTTCATGC
AACCAGTGTATAATCCTCAGCAGTACTCAGTGTATAGTCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGC
ACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTAGTTTTGTGAATGGCTTTAGTTCACCAGGA
TCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTCCCAAAAAATCGTGTGAAGCCTCATT
TTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATTGGGGGATGGACCACTGAGCAG
ATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGCAGCAGGAACAAACTTAT
CTTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGCAGGCGAACTCTCT
TCAGAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGAAGCCAAGGC
TCCAACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAGTGCCA
GATGAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAGG
ACGTGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCAT
AAGTCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATG
GAGGACTCTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAA
AGCCATCCCCGGCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCA
GGAACCTCGAAAGTTAAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTA
CAGCCGCTGCGGGAACTCCGGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGA
AGCCTGTTGAGAAGCCGCATGAGAAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAA
CACTATTCCCAGGGGAGCGGCTGGAAAAATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCT
CAGGGAGTGACTCGACGTAATGGGAAAGAGCAATACGTGCCACCCAGATCACCAAAGTAA

Translation (719 aa):
MLLFVEVTSKGTGLNPNAKVWQEIPSGNPDGTPVTEPSWHETAATSGSHPEGHTELSEDMCKEYEVMYSP
SCETTRNTADVEESADGMILGPEDLSYQLYDVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS
QMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEE
VKALFKNENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYR
LMDSSMYTQPIQTPTQYPSPVFMQPVYNPQQYSVYSLVPQSWSPSPAPYFETPLAPFPNGSFVNGFSSPG
SYKTNAAAMNMGRPFPKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRIFLSERHNPTVTGQQEQTY
LPKEAPILQMEQNGDFGRGRRTLFRGRRRRDDDRIPRPQPAATEAKAPTPKFDLLATNFPPLPGSSSRVP
DELGLENRMSDVVKGVCREKDSEDVRVSCPVPAEDGQTDCTSAPLSISPSPPCTAEPPVLSTTQQEQDQM
EDSAVPKDTLNPVAVPVSSPTATKPSPANTASPCTSNINPPRAVALQEPRKLSYAEVCQKPPKEPSPVLV
QPLRELRSNAVSPTRNEENGAPEKPVEKPHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATP
QGVTRRNGKEQYVPPRSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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