NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37153.1 Public Mus musculus 15 Xrcc6 23 108 98 CCDS HistoryNCBI Gene:14375Re-query CCDS DB by CCDS ID:37153.1Re-query CCDS DB by GeneID:14375See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069530.12 ENSMUSP00000068559.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069530.12Link to Ensembl Protein Viewer:ENSMUSP00000068559.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069530Re-query CCDS DB by Protein ID:ENSMUSP00000068559
Original member Current member EBI ENSMUST00000100399.10 ENSMUSP00000097968.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100399.10Link to Ensembl Protein Viewer:ENSMUSP00000097968.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100399Re-query CCDS DB by Protein ID:ENSMUSP00000097968
Original member NCBI NM_010247.2 NP_034377.2 Updated not alive Link to Nucleotide Sequence:NM_010247.2Link to Protein Sequence:NP_034377.2Re-query CCDS DB by Nucleotide ID:NM_010247Re-query CCDS DB by Protein ID:NP_034377
Current member NCBI NM_010247.3 NP_034377.2 Accepted alive Link to Nucleotide Sequence:NM_010247.3Link to Protein Sequence:NP_034377.2Re-query CCDS DB by Nucleotide ID:NM_010247Re-query CCDS DB by Protein ID:NP_034377Link to BLAST:NP_034377.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034377.2 608 P23475 608 99.8355% 0 1

Chromosomal Locations for CCDS 37153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82017123 82017198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82018981 82019093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82022445 82022583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82022807 82023061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82025505 82025688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82027225 82027411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82029122 82029290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82029563 82029724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82031133 82031262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82035677 82035777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82037457 82037570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82039722 82039918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGTCAGAGTGGGAGTCCTACTACAAAACTGAGGGCGAGGAAGAGGAAGAGGAGGAGGAGAGCCCCGACA
CAGGTGGAGAATATAAATATTCAGGAAGAGATAGCTTGATTTTTCTGGTTGATGCCTCCAGGGCTATGTT
CGAATCTCAGGGTGAAGATGAACTCACACCTTTTGATATGAGCATCCAGTGTATCCAGAGTGTGTACACC
AGTAAGATCATAAGCAGCGATCGGGATCTCCTGGCAGTGGTGTTCTATGGAACCGAGAAAGATAAAAATT
CAGTGAATTTCAAAAATATTTATGTCTTACAAGATTTGGACAACCCAGGCGCTAAGCGAGTGCTAGAGCT
CGACCAGTTTAAGGGACAACAGGGGAAGAAGCACTTCCGAGACACGGTTGGCCATGGGTCTGACTACTCT
TTGAGTGAAGTGCTCTGGGTCTGTGCCAACCTCTTCAGCGACGTCCAGCTCAAGATGAGTCACAAGAGGA
TCATGCTGTTCACCAATGAAGACGACCCCCATGGCCGTGACAGTGCTAAAGCCAGCCGGGCCAGGACCAA
AGCCAGCGACCTCCGGGACACTGGGATCTTCCTTGACTTGATGCATCTGAAGAAGCCAGGAGGCTTTGAT
GTATCCGTGTTCTACAGGGACATCATCACCACCGCTGAGGACGAGGACCTTGGGGTTCACTTCGAGGAGT
CAAGCAAGCTGGAAGACCTGCTAAGGAAGGTTCGAGCCAAGGAGACCAAAAAGCGAGTTCTGTCCAGGTT
AAAGTTTAAGCTCGGTGAAGACGTAGTACTCATGGTGGGCATTTATAACTTGGTCCAGAAAGCTAACAAG
CCTTTTCCAGTGAGACTCTATCGGGAAACAAATGAACCAGTGAAAACCAAGACAAGGACTTTTAATGTAA
ACACCGGCAGTCTACTCCTGCCTAGTGACACCAAGCGGTCTCTGACTTATGGGACACGTCAGATTGTGCT
GGAGAAAGAGGAGACAGAGGAGCTGAAGCGGTTTGATGAGCCAGGTTTGATCCTCATGGGCTTTAAGCCC
ACGGTGATGCTGAAGAAGCAGCACTACCTGAGGCCCTCTCTGTTCGTGTACCCGGAGGAGTCCCTGGTCA
GTGGGAGCTCAACCTTGTTCAGCGCTCTGCTCACCAAGTGTGTGGAGAAGGAGGTCATAGCAGTGTGTAG
ATACACACCCCGGAAGAACGTCTCCCCGTATTTTGTGGCTTTGGTGCCCCAGGAAGAGGAGCTGGATGAT
CAGAACATTCAGGTGACTCCAGGAGGCTTCCAGCTTGTCTTCCTCCCTTATGCCGATGACAAGCGGAAGG
TGCCCTTTACTGAGAAGGTGACGGCCAACCAGGAGCAGATAGACAAGATGAAGGCCATTGTTCAAAAGCT
CCGCTTCACATACAGGAGCGACAGTTTTGAGAATCCAGTCCTGCAGCAGCACTTCCGCAACCTGGAGGCC
CTAGCTTTGGACATGATGGAGTCGGAGCAAGTGGTAGATCTGACACTACCCAAGGTTGAAGCCATAAAGA
AAAGACTGGGTTCCCTGGCAGATGAGTTTAAAGAACTTGTCTATCCTCCAGGTTATAATCCCGAGGGAAA
AGTTGCCAAGAGAAAACAAGATGATGAAGGTTCTACGAGTAAAAAGCCCAAGGTAGAGTTATCAGAAGAA
GAGCTGAAGGCCCATTTTCGTAAGGGCACACTGGGTAAGCTCACTGTACCTACACTGAAGGACATATGCA
AGGCTCATGGGCTTAAGAGTGGGCCGAAGAAGCAGGAACTGCTAGATGCTCTTATCAGACACTTGGAGAA
GAACTGA

Translation (608 aa):
MSEWESYYKTEGEEEEEEEESPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYT
SKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS
LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAKASRARTKASDLRDTGIFLDLMHLKKPGGFD
VSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFKLGEDVVLMVGIYNLVQKANK
PFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKP
TVMLKKQHYLRPSLFVYPEESLVSGSSTLFSALLTKCVEKEVIAVCRYTPRKNVSPYFVALVPQEEELDD
QNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQKLRFTYRSDSFENPVLQQHFRNLEA
LALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE
ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH