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Report for CCDS37058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37058.1 Public Mus musculus 15 Nipal2 23 108 98 CCDS HistoryNCBI Gene:223473Re-query CCDS DB by CCDS ID:37058.1Re-query CCDS DB by GeneID:223473See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040791.8 ENSMUSP00000038922.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040791.8Link to Ensembl Protein Viewer:ENSMUSP00000038922.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040791Re-query CCDS DB by Protein ID:ENSMUSP00000038922
Original member Current member NCBI NM_145469.5 NP_663444.2 Accepted alive Link to Nucleotide Sequence:NM_145469.5Link to Protein Sequence:NP_663444.2Re-query CCDS DB by Nucleotide ID:NM_145469Re-query CCDS DB by Protein ID:NP_663444Link to BLAST:NP_663444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663444.2 383 Q91WC7 383 99.4778% 0 2

Chromosomal Locations for CCDS 37058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34575459 34575571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34577570 34577664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34578708 34578771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34582721 34582809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34584630 34584765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34600015 34600111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34609173 34609294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34624972 34625031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34648666 34648837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34650382 34650450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34678559 34678693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGCGGCTCCGGCGCGCACAGCCCCCGAGGACGACGCCTCGGCCGTCCTAGACGAGCTGTCTCGGAACT
TCACATACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAGCGCCTGGTATCGCAGAAACCAGATTCA
CCTTTTTGGAGTTTTGCTGGCCATTTTAGGAAACCTGGTTATCAGCATTTCCCTAAATATCCAGAAATAT
TCTCATCTTCATTTGGCCCAGAAAGAGCACCCAAAGCCATACTTTAAGAGTGTGCTTTGGCTGAGTGGAG
TCCTGCTGACAGCCCTAGGAGAGACAGGCAATTTCGCAGCCTATGGGGTTGCCCCCATCACTCTGATCGC
ACCACTGGGGTGCATGTCAGTTACAGGTAGTGCCATAATTTCTGTTATATTTCTAAAAGAAAATTTGAGA
GCCTCGGATTTACTAGGTATGACACTAGCATTTGCAGGAACATATTTATTGGTGAATTTTGCTCCAAATG
TCACCCAGGCTATCTCAGCAAGAACAGTACAGTATTACTTTGTTGGCTGGCAATTCCTGGTCTATGTGAT
TTTAGAAATCCTAGTTTTCTGCATCCTTCTGTATTTCCATAAAAGGAAAGGAATGAAGCACATTGTGGTC
CTGCTCACCCTGGTGGCACTCCTTGCCTCATTGACTGTGATTTCTGTGAAGGCTGTCTCAGGCATGATCA
CTCTTTCTGTGACGGGTAAAATGCAGCTAACTTATGCCATCTTCTACATCATGCTTGTCATCATGATAGC
CTCTTGCGTTTTCCAAGTCAAGTTCCTGAATCAAGCCACAGAACTCTACACAATGACCACAGTGGTGCCA
GTCAACCATGTTTTCTTTACAACCAGCGCCATCATCGCAGGCATCATATTTTACCAGGAATTCCTTGGTG
CTGCTTTTCTCACTGTATTTATATATCTTTTTGGGTGCTTTCTGTCATTCCTTGGAGTATTTTTAGTGAC
AAGAAATAGAGAAAAGGAGCATCTACAACAGTCTTTTGTTGACCTTGGGGATATTCCTGGGAAACAAATG
TTGGACAAAGTACAACCAGATTCAAATGGCTTATCCTATGGAACCTTGCCTGATGGAGGCGACTCAACAA
GGGGCCAATGTGGAGAGAAGAAAGAATCCTAG

Translation (383 aa):
MAAPARTAPEDDASAVLDELSRNFTYWAPGPGNGSLSSAWYRRNQIHLFGVLLAILGNLVISISLNIQKY
SHLHLAQKEHPKPYFKSVLWLSGVLLTALGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVIFLKENLR
ASDLLGMTLAFAGTYLLVNFAPNVTQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKHIVV
LLTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMTTVVP
VNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREKEHLQQSFVDLGDIPGKQM
LDKVQPDSNGLSYGTLPDGGDSTRGQCGEKKES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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