NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36940.1 Public Mus musculus 14 Cdadc1 23 108 98 CCDS HistoryNCBI Gene:71891Re-query CCDS DB by CCDS ID:36940.1Re-query CCDS DB by GeneID:71891See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056997.14 ENSMUSP00000052233.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056997.14Link to Ensembl Protein Viewer:ENSMUSP00000052233.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056997Re-query CCDS DB by Protein ID:ENSMUSP00000052233
Original member Current member NCBI NM_027986.3 NP_082262.1 Accepted alive Link to Nucleotide Sequence:NM_027986.3Link to Protein Sequence:NP_082262.1Re-query CCDS DB by Nucleotide ID:NM_027986Re-query CCDS DB by Protein ID:NP_082262Link to BLAST:NP_082262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082262.1 523 Q8BMD5-1 523 100% 0 0

Chromosomal Locations for CCDS 36940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59564498 59564595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59568948 59569008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59573647 59573836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59575734 59575903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59581325 59581374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59586039 59586608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59589788 59589965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59592461 59592535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59596862 59596959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59597755 59597836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAAAGAAACGGATCAGATGCAGAGTTTGGAGGGTTCCGGGGCCGAGAGGTCAGTCGGCACGCAGACGG
GCAGCATGACGGGTCAAATACCAAGGCTTTCTAAAGTGAACCTTTTCACCCTGCTCAGTCTCTGGATGGA
GCTCTTCCCAGGAGTGGAAGCCCAAGGGCAAAAATCTCAGAAAACTGAAGAGGAAAGCCGTGGTCCCTTA
GGAGACAATGAAGAGTTGACCAGAGTGTCTACTGAAAAAAAACAGGTGAAGAAAACTGGTCTTGTGGTGG
TGAAAAACATGAAGATCATTGGTCTTCACTGCTCCAGTGAAGACTTACATACTGGGCAAATTGCTCTCAT
TAAGCATGGGTCCAGGCTGAAAAACTGTGATCTTTATTTTTCAAGAAAACCATGTTCTGCTTGTTTGAAA
ATGATAGTGAATGCTGGAGTTAACCGAATTTCTTACTGGCCTTCTGACCCAGAAATAAGTTTGCTCACTG
AAGCTTCTAGTTCTGAAGATGCAAAGCTAGATGCCAAAGCCGCAGAAAGATTGAAGTCAAACAGCCGGGC
CCATGTGTGTGTCTTACTCCAGCCGTTGGTGTGTTACATGGTGCAGTTTGTGGAGGAAACCTCTTACAAA
TGTGACTTTATTCAGAAAACTGCAAAAGCGTTGCCGGGTGCTGACACTGATTTTTATTCTGAATGTAAAC
AAGAAAGAATAAAAGAGTATGAAATGTTATTTTTGGTTTCAAATGAAGAAAGGCATAAGCAGATACTGAT
GACTATAGGTCTGGAGAGCCTGTGTGAAGACCCCTATTTTAGCAATCTAAGGCAAAACATGAAAGACCTG
ATTCTACTTTTGGCCACAGTAGCTTCTAGTGTGCCCAACTTGAAACACTTCGGATTCTACTGTAGCAGCC
CAGAGCAGATTAATGAAATTCACAATCAGAGTTTGCCACAGGAAGTTGCAAGGCATTGCATGGTGCAGGC
CAGGTTATTGGCATATCGAACTGAGGATCATAAAACAGGAGTTGGAGCTGTCATTTGGGCAGAAGCGAAA
TCTAGAAGCTGCGATGGGACTGGAGCCATGTACTTCATAGGGTGCGGGTACAATGCCTTTCCCGTGGGCT
CTGAGTATGCCGACTTCCCGCACATGGATGACAAGCATAAGGACAGAGAAATACGGAAGTTCAGATACAT
CATACATGCGGAGCAGAACGCTTTGACATTTAGATGTCAAGATATAAAACCAGAAGAACGCAGCATGATT
TTTGTGACAAAATGCCCCTGTGATGAATGTGTGCCTTTAATTAAAGGTGCAGGCATAAAGCAGATCTATG
CTGGTGACGTAGATGTTGGAAAGAAGAAAGCAGACATCTCGTACATGAAGTTTGGGGAGCTTGAGGGTGT
TCGCAAATTCACATGGCAGTTGAATCCGTCTGAAGCTTATAGTCTTGACCCAAATGAGCCTGAAAGGAGA
GAAAACGGTGTATTGAGGCGCAGGTCTGCAAAGGACGAACAGCGCAGCAGCAAGAGGCCACGTCTGGAAA
CCCGCTCTGCAGGTCGGGCTACACTGCAGTAA

Translation (523 aa):
MKETDQMQSLEGSGAERSVGTQTGSMTGQIPRLSKVNLFTLLSLWMELFPGVEAQGQKSQKTEEESRGPL
GDNEELTRVSTEKKQVKKTGLVVVKNMKIIGLHCSSEDLHTGQIALIKHGSRLKNCDLYFSRKPCSACLK
MIVNAGVNRISYWPSDPEISLLTEASSSEDAKLDAKAAERLKSNSRAHVCVLLQPLVCYMVQFVEETSYK
CDFIQKTAKALPGADTDFYSECKQERIKEYEMLFLVSNEERHKQILMTIGLESLCEDPYFSNLRQNMKDL
ILLLATVASSVPNLKHFGFYCSSPEQINEIHNQSLPQEVARHCMVQARLLAYRTEDHKTGVGAVIWAEAK
SRSCDGTGAMYFIGCGYNAFPVGSEYADFPHMDDKHKDREIRKFRYIIHAEQNALTFRCQDIKPEERSMI
FVTKCPCDECVPLIKGAGIKQIYAGDVDVGKKKADISYMKFGELEGVRKFTWQLNPSEAYSLDPNEPERR
ENGVLRRRSAKDEQRSSKRPRLETRSAGRATLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH