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Report for CCDS36925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36925.1 Public Mus musculus 14 Efs 23 108 98 CCDS HistoryNCBI Gene:13644Re-query CCDS DB by CCDS ID:36925.1Re-query CCDS DB by GeneID:13644See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022813.7 ENSMUSP00000022813.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022813.7Link to Ensembl Protein Viewer:ENSMUSP00000022813.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022813Re-query CCDS DB by Protein ID:ENSMUSP00000022813
Original member NCBI NM_010112.4 NP_034242.2 Updated not alive Link to Nucleotide Sequence:NM_010112.4Link to Protein Sequence:NP_034242.2Re-query CCDS DB by Nucleotide ID:NM_010112Re-query CCDS DB by Protein ID:NP_034242
Current member NCBI NM_010112.5 NP_034242.2 Accepted alive Link to Nucleotide Sequence:NM_010112.5Link to Protein Sequence:NP_034242.2Re-query CCDS DB by Nucleotide ID:NM_010112Re-query CCDS DB by Protein ID:NP_034242Link to BLAST:NP_034242.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034242.2 560 Q64355 560 100% 0 0

Chromosomal Locations for CCDS 36925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54917098 54917532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54919329 54919418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54919695 54920414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54920505 54920645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54920903 54921181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54925438 54925455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCCATTGCCACGTCGGCCCAGCTTGCCCGGGCATTGTACGACAACACTGCAGAGTCCCCCCAGGAAC
TGTCCTTCCGCCGAGGGGATGTTCTACGGGTACTGCAGAGGGAGGGTGCTGGTGGACTTGATGGTTGGTG
CCTCTGCTCTCTGCATGGCCAGCAGGGTATTGTCCCTGCTAACAGAGTGAAGCTCCTTCCTGCTGGCCCA
GCACCCAAGCCTAGCCTCTGCCCAGCATCTCCCACCCAGCCTGGCTCATCATGTCCCACCCCAGAGCGTG
GCTGTGAGGAGCAGGAGGTGTATGTAATACCACCACCAGCTCGACCCTGCTCTGCCTCGGGACTTCCAGC
TAGATCCTGCTCACCCTCTTCTGACTCCATCTACAAGGTCCCCCGAGGCAATGGGATGCAGCTGACTGCC
TCCAGAGACGTGGCAGAGGTCTATGATGTGCCTCCCAACATCCTCCGGGCTCCCTCCAGCTGTCCCTATG
ACTCCCCAGCCTCCTTTTCCTGTCCTGTGGCCCCAGTTGTCCCACAGCCCCCCAGAGAGGATGAAGCGCC
CTACGATGTGCCTCTGGCCTTAAAGCCACCTGCAGAGCTGGAGCGGGATCCGGAGTGGGAAGGGGGCCGG
GAGCCAGGGCCTCCTCTTTACGCTGCCCCTTCCAACCTGAAACGGGCCTCGGCTCTGCTCAACCTGTACG
AAGCACCCGAGGAACTCCTGGCAAATGGAGAAAGCAGGGATGCAGATGAAGGCATTTACGATGTGCCTCT
GCTGGGGCCAGAGCCACCGTCCCCAGAGCCTCCAGTGGCTTCTTCCTCCACTGACCTGGACACTGTGGCC
CAGCTTCCGACCAGAAGCTCCCCACCCCAACACAGGCCCAGGCTACCATCCACTGAGAGCCTGTCCCGCC
GCCCTCTGCCTGCCCTCCCTGTCTCTGAGGCTCCTGCTCCTTCTCCAGCTCCTTCTCCTGCCCCAGGCCG
AAAGGGCAGTATCCAGGACAGGCCTCTACCCCCTCCCCCACCCTGCCTGCCTGGTTATGGGGGCCTCAAA
CCCGAGGGAGATCCAGAGTGCAGGGAGGTAGCCAATGATCCAGCAGGCCCTCACAATGAATATGAAGGCA
TCCCAATGGCCGAGGAATATGACTACGTGCATCTGAAGGGTGTGGATACAGCTCAGGGTTCTAGACCCCT
GGATAAAGCTTTCCCAGTGGATCCTGAATTGCTGGAGAGGGGACTGGCGGAACGGAAGGAAGCTCTGTCC
CCAGAGGAGCCACTGGTCCTGTCCACTGGAGACCTCCAACTTCTGCACTTCTACGCAGGGCAGTGCCAGA
GCCATTACTCAGCTCTGCAAGCTGCCGTGGCAGCTCTCGTGGCCAGCACCCAGGCCAACCAGCCACCATG
TCTCTTTGTGCCCCACGGCAAAAGAGTGGTGGTGGCTGCTCACCGCCTGGTGTTTGTTGGAGACACCCTA
GGCCGGCTGGCAGCCTCTGCAGCTCTCAGAGCACAGGTGGGGGCTGCAGGCACAATGCTGGCCCAAACTC
TGCGGGCCACTGTGCTTGCTGTCAAGGGGGCTGCCTTAGGCTACCCATCTGACACTGCAGTCCAAGAGAT
GGCGCGATGCGTGGCAGAGCTTGCAGGGCAGGCCCTACGCTTTACCACCCTACTCGATGGTCTGCTCCCC
TGA

Translation (560 aa):
MAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGP
APKPSLCPASPTQPGSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSCSPSSDSIYKVPRGNGMQLTA
SRDVAEVYDVPPNILRAPSSCPYDSPASFSCPVAPVVPQPPREDEAPYDVPLALKPPAELERDPEWEGGR
EPGPPLYAAPSNLKRASALLNLYEAPEELLANGESRDADEGIYDVPLLGPEPPSPEPPVASSSTDLDTVA
QLPTRSSPPQHRPRLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQDRPLPPPPPCLPGYGGLK
PEGDPECREVANDPAGPHNEYEGIPMAEEYDYVHLKGVDTAQGSRPLDKAFPVDPELLERGLAERKEALS
PEEPLVLSTGDLQLLHFYAGQCQSHYSALQAAVAALVASTQANQPPCLFVPHGKRVVVAAHRLVFVGDTL
GRLAASAALRAQVGAAGTMLAQTLRATVLAVKGAALGYPSDTAVQEMARCVAELAGQALRFTTLLDGLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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