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Report for CCDS36781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36781.1 Public Mus musculus 13 Il31ra 23 108 98 CCDS HistoryNCBI Gene:218624Re-query CCDS DB by CCDS ID:36781.1Re-query CCDS DB by GeneID:218624See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051756.7 ENSMUSP00000058045.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051756.7Link to Ensembl Protein Viewer:ENSMUSP00000058045.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051756Re-query CCDS DB by Protein ID:ENSMUSP00000058045
Original member Current member NCBI NM_139299.2 NP_647460.2 Accepted alive Link to Nucleotide Sequence:NM_139299.2Link to Protein Sequence:NP_647460.2Re-query CCDS DB by Nucleotide ID:NM_139299Re-query CCDS DB by Protein ID:NP_647460Link to BLAST:NP_647460.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647460.2 716 Q8K5B1-1 716 100% 0 0

Chromosomal Locations for CCDS 36781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112523903 112524370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112525834 112525915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112527460 112527553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112530279 112530419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112531668 112531814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112532911 112533012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112533736 112533921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112541070 112541286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112543887 112543966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112546180 112546333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112547357 112547499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112549417 112549580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112551869 112551986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112559148 112559202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGTGGACCTTGGCACTGTGGGCATTCTCTTTCCTCTGCAAATTCAGCCTGGCAGTCCTGCCGACTAAGC
CAGAGAACATTTCCTGCGTCTTTTACTTCGACAGAAATCTGACTTGCACTTGGAGACCAGAGAAGGAAAC
CAATGATACCAGCTACATTGTGACTTTGACTTACTCCTATGGAAAAAGCAATTATAGTGACAATGCTACA
GAGGCTTCATATTCTTTTCCCCGTTCCTGTGCAATGCCCCCAGACATCTGCAGTGTTGAAGTACAAGCTC
AAAATGGAGATGGTAAAGTTAAATCTGACATCACATATTGGCATTTAATCTCCATAGCAAAAACCGAACC
ACCTATAATTTTAAGTGTGAATCCAATTTGTAATAGAATGTTCCAGATACAATGGAAACCGCGTGAAAAG
ACTCGTGGGTTTCCTTTAGTATGCATGCTTCGGTTCAGAACTGTCAACAGTAGCCACTGGACGGAAGTCA
ATTTTGAAAACTGTAAACAGGTCTGCAACCTCACAGGACTTCAGGCTTTCACAGAATATGTCCTGGCTCT
ACGATTCAGGTTCAATGACTCAAGATATTGGAGCAAGTGGAGCAAAGAAGAAACCAGAGTGACTATGGAG
GAAGTTCCACATGTCCTGGACCTGTGGAGAATTCTGGAACCAGCAGACATGAACGGAGACAGGAAGGTGC
GATTGTTGTGGAAGAAGGCAAGAGGAGCCCCCGTCTTGGAGAAAACATTTGGCTACCACATACAGTACTT
TGCAGAGAACAGCACTAACCTCACAGAGATAAACAACATCACCACCCAGCAGTATGAACTGCTTCTGATG
AGCCAGGCACACTCTGTGTCCGTGACTTCTTTTAATTCTCTTGGCAAGTCCCAAGAGGCCATCCTGAGGA
TCCCAGATGTCCATGAGAAGACCTTCCAGTACATTAAGAGCATGAAGGCCTACATAGCCGAGCCCCTGTT
GGTGGTGAACTGGCAAAGCTCCATTCCTGCGGTGGACACTTGGATAGTGGAGTGGCTCCCAGAAGCTGCC
ATGTCGAAGTTCCCTGCCCTTTCCTGGGAATCTGTGTCTCAGGTCACGAACTGGACCATCGAGCAAGATA
AACTAAAACCTTTCACATGCTATAATATATCAGTGTATCCAGTGTTGGGACACCGAGTTGGAGAGCCGTA
TTCAATCCAAGCTTATGCCAAAGAAGGAACTCCATTAAAAGGTCCTGAGACCAGGGTGGAGAACATCGGT
CTGAGGACAGCCACGATCACATGGAAGGAGATTCCTAAGAGTGCTAGGAATGGATTTATCAACAATTACA
CTGTATTTTACCAAGCTGAAGGTGGAAAAGAACTCTCCAAGACTGTTAACTCTCATGCCCTGCAGTGTGA
CCTGGAGTCTCTGACACGAAGGACCTCTTATACTGTTTGGGTCATGGCCAGCACCAGAGCTGGAGGTACC
AACGGGGTGAGAATAAACTTCAAGACATTGTCAATCAGTGTGTTTGAAATTGTCCTTCTAACATCTCTAG
TTGGAGGAGGCCTTCTTCTACTTAGCATCAAAACAGTGACTTTTGGCCTCAGAAAGCCAAACCGGTTGAC
TCCCCTGTGTTGTCCTGATGTTCCCAACCCTGCTGAAAGTAGTTTAGCCACATGGCTCGGAGATGGTTTC
AAGAAGTCAAATATGAAGGAGACTGGAAACTCTGGGGACACAGAAGACGTGGTCCTAAAACCATGTCCCG
TCCCCGCGGATCTCATTGACAAGCTGGTAGTGAACTTTGAGAATTTTCTGGAAGTAGTTTTGACAGAGGA
AGCTGGAAAGGGTCAGGCGAGCATTTTGGGAGGAGAAGCGAATGAGTATGTGACCTCCCCGTCTAGGCCC
GACGGTCCCCCAGGGAAAAGTTTTAAAGAGCCCTCCGTTTTAACTGAGGTTGCTTCTGAAGACTCCCACA
GCACGTGTTCCAGAATGGCGGACGAGGCGTACTCAGAATTGGCCAGGCAGCCTTCGTCTTCCTGTCAGAG
TCCAGGGCTATCGCCTCCCCGTGAAGACCAAGCTCAGAATCCATATTTGAAAAATTCAGTGACAACCAGG
GAATTTCTTGTGCATGAGAATATCCCAGAGCACAGCAAAGGAGAAGTCTGA

Translation (716 aa):
MWTLALWAFSFLCKFSLAVLPTKPENISCVFYFDRNLTCTWRPEKETNDTSYIVTLTYSYGKSNYSDNAT
EASYSFPRSCAMPPDICSVEVQAQNGDGKVKSDITYWHLISIAKTEPPIILSVNPICNRMFQIQWKPREK
TRGFPLVCMLRFRTVNSSHWTEVNFENCKQVCNLTGLQAFTEYVLALRFRFNDSRYWSKWSKEETRVTME
EVPHVLDLWRILEPADMNGDRKVRLLWKKARGAPVLEKTFGYHIQYFAENSTNLTEINNITTQQYELLLM
SQAHSVSVTSFNSLGKSQEAILRIPDVHEKTFQYIKSMKAYIAEPLLVVNWQSSIPAVDTWIVEWLPEAA
MSKFPALSWESVSQVTNWTIEQDKLKPFTCYNISVYPVLGHRVGEPYSIQAYAKEGTPLKGPETRVENIG
LRTATITWKEIPKSARNGFINNYTVFYQAEGGKELSKTVNSHALQCDLESLTRRTSYTVWVMASTRAGGT
NGVRINFKTLSISVFEIVLLTSLVGGGLLLLSIKTVTFGLRKPNRLTPLCCPDVPNPAESSLATWLGDGF
KKSNMKETGNSGDTEDVVLKPCPVPADLIDKLVVNFENFLEVVLTEEAGKGQASILGGEANEYVTSPSRP
DGPPGKSFKEPSVLTEVASEDSHSTCSRMADEAYSELARQPSSSCQSPGLSPPREDQAQNPYLKNSVTTR
EFLVHENIPEHSKGEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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