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Report for CCDS36678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36678.1 Public Mus musculus 13 Fam193b 23 108 98 CCDS HistoryNCBI Gene:212483Re-query CCDS DB by CCDS ID:36678.1Re-query CCDS DB by GeneID:212483See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021957.7 ENSMUSP00000021957.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021957.7Link to Ensembl Protein Viewer:ENSMUSP00000021957.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021957Re-query CCDS DB by Protein ID:ENSMUSP00000021957
Original member NCBI NM_145382.4 NP_663357.2 Updated not alive Link to Nucleotide Sequence:NM_145382.4Link to Protein Sequence:NP_663357.2Re-query CCDS DB by Nucleotide ID:NM_145382Re-query CCDS DB by Protein ID:NP_663357
Current member NCBI NM_145382.5 NP_663357.2 Accepted alive Link to Nucleotide Sequence:NM_145382.5Link to Protein Sequence:NP_663357.2Re-query CCDS DB by Nucleotide ID:NM_145382Re-query CCDS DB by Protein ID:NP_663357Link to BLAST:NP_663357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663357.2 778 Q3U2K0-2 778 100% 0 0

Chromosomal Locations for CCDS 36678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55541625 55541721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55542582 55542657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55542784 55543789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55549118 55549357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55550224 55550407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55552962 55553349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55554217 55554448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55555983 55556096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGCCAAAGCTCGTCAAGAATCTCCTAGGCGAGATGCCTCTGTGGGTCTGCCAGAGCTGCCGAAAGAGCA
TGGAGGAGGAGGAGAGGCAGACAGGTGGAGACCATGCAGTGGCGATCTCCTTGTCACACACATCCTGCAA
ATCACAGTCTTGTGGGGGTGACTCTCATTCATCCTCGTCCTCTTCATCATCCTCATCTTCCTCCTCCTCT
TCCTGCCATGGGAACTCAGGGGACTGGGATCCCAGCTCGTTCCTGTCAGCACATAAGCTCTCAGGCCTCT
GGAACTCCCCACACTCCAGCGGGGCTGTGCCAGGCAGCTCGCTTGGGAGTCCTCCTGCCATCCTTGGTGA
GGCTTTCCCTGTCTCGGAGCACCACCAGCACTCAGACCTTACTGCTCCCCCTAACAGCCCCACTGGTCCT
CCCCCCCACCCAGCATCTCTGATTCCTTCTCACCCTGGTTCCTTCAGCTCGGCGTCCTACCCACCCCCGC
TGCCCACCACCCCAGTGGCACCTTTCCCCGCTCAGGCTTCAGAGTGCCCTATGGCTGCTGCCACTGCCAC
CCACCCCTCGGGGCCATGTCAGAGCCCTCATCCGCCCTCCACCAGCATGCCACTCCTGAAGATGCCTCCA
CCACTCTCGGGGTGCAGCCACCCCTGCAGCGGGCACTGCAGCGGGCACTGTGGTGGTCCTCTTCTCCCAC
CACCGAGCTCTCAGCCGCTCCCTAGCACTCACAGCAGGGACCCTGGGTGCAAGGGGCACAAATTTGCACA
CAGTGGCCTGGCCTGTGAGGCAGATGAGGGTCTGGGCGAGGAAGAGGATAGCAGCTCTGAGCGCAGCTCT
TGCACCTCGTCCTCCACCCACCCCCGCGATGGGAAGTTCTGTGACTGCTGCTACTGTGAGTTCTTCGGCC
ACAATGCGCCACTCGCTGCCCCGACGAGCCGGAATTATACTGAGATCCGGGAGAAGCTCCGCTCAAGGCT
GACCAGGCGGAAAGAGGAGCTGCCCATGAAGGGGGGCACCCTGGGCGGGATCCCTGGGGAGCCTGCGGTG
GACCACCGAGATGTGGATGAGCTGCTGGAATTCATCAACAGCACGGAGCCCAAAGTCCCCAACAGCGCCA
GGGCTGCCAAGCGGGCCCGGCACAAGCTGAAAAAGAAGGAAAAAGAGAAGGCTCGGTTGGCCACAGAAGC
TCTGAAGCAGGTGAATCGTGTTTCTGGAAGCCAGGAGCCAAGGCCTGCCAGGGAGAGGCTCCTAGAGTGG
CCTGACCAGGAACTGGACCGCGTCAATAGCTTCTTGAGCAGCCGCTTGCAGGAGATCAAGAGCACTGTCA
AGGACTCCCTCTGTGCCAGCCTGAGTATGTGTGAGCTCAGCGTGGAGAGCAGTGGGTTTAAGGAGGGGAC
TGTGGAAGCTCAGACCCTCACTCCTTCAGACCTCAGTGGCTCCTCTCAGAAACGGCCTGACATCAACCTT
GACCTGTCCCCTTTGACCTTGGGTTCCCCTCAGAGCCACACGTTACAAGCCCCAAGTGAACCAGTCCCAC
CTTGGGCAGAAAGGAGAGACCCTCACCCACCACCATGGACAGAGGTGAGGGGCCCACCTCCTGGTATCCC
TGAGAATGGGCTTGTGAGAAGACTCAACACTGTGCCCAACCTGTCCAGGGTGATCTGGGTCAAGACACCC
AAGCCAGGCAACCCAAGCTCTGAGGAAAGTTCAAAGGAAGTTCCCAGTTGCAAACAGGAATTATCTGAGC
CTGTGGCCACAGGTGGAAAGCCAAAAAAGAGCAAGAGACAGGGAAGTCAAGCAAAGAAGACTTTGGCAAG
TCCAGCCCCCTGGTCACCAGCCAATCTAGAGGCTTCCGGTGCCAAGAGCCAGGTATCTAGCCCCAAGCAG
CCCAGCAAGGGCTCAGAGCCTGCCAAAGTGGGCAGTGGTGCAGAACCTGGAGAGGGCAGTCCGGGGAGCC
GGCCAGGACCAATTCAGGCTGACAGCCCCAAAACTGACAAGAAGGGTAGTTCCTGGCAGAATTGGCCAGG
TGGGGCCAAGGCACGGACTCTGGAGCAGGAATCTGAGCAGACCCCTGGTCCAGCAAGGCCACAGAGCTTG
TCCCAAGGCAAGGGCCGCAGCCGCCGGAGCCGAAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG
TGTTCCTGCCCAAAGACTTGGATGGGGTGGAGATGGATGAGACAGACCGAGAGGTGGAGTACTTCAAGAG
GTTCTGTTTGGATTCTGCAAAGCAAACTCGTCAGAAAGTTGCTGTGAACTGGACCAACTTCAGCCTCAAG
AAAACCACTCCTAGCACAGCTCAGTGA

Translation (778 aa):
MPKLVKNLLGEMPLWVCQSCRKSMEEEERQTGGDHAVAISLSHTSCKSQSCGGDSHSSSSSSSSSSSSSS
SCHGNSGDWDPSSFLSAHKLSGLWNSPHSSGAVPGSSLGSPPAILGEAFPVSEHHQHSDLTAPPNSPTGP
PPHPASLIPSHPGSFSSASYPPPLPTTPVAPFPAQASECPMAAATATHPSGPCQSPHPPSTSMPLLKMPP
PLSGCSHPCSGHCSGHCGGPLLPPPSSQPLPSTHSRDPGCKGHKFAHSGLACEADEGLGEEEDSSSERSS
CTSSSTHPRDGKFCDCCYCEFFGHNAPLAAPTSRNYTEIREKLRSRLTRRKEELPMKGGTLGGIPGEPAV
DHRDVDELLEFINSTEPKVPNSARAAKRARHKLKKKEKEKARLATEALKQVNRVSGSQEPRPARERLLEW
PDQELDRVNSFLSSRLQEIKSTVKDSLCASLSMCELSVESSGFKEGTVEAQTLTPSDLSGSSQKRPDINL
DLSPLTLGSPQSHTLQAPSEPVPPWAERRDPHPPPWTEVRGPPPGIPENGLVRRLNTVPNLSRVIWVKTP
KPGNPSSEESSKEVPSCKQELSEPVATGGKPKKSKRQGSQAKKTLASPAPWSPANLEASGAKSQVSSPKQ
PSKGSEPAKVGSGAEPGEGSPGSRPGPIQADSPKTDKKGSSWQNWPGGAKARTLEQESEQTPGPARPQSL
SQGKGRSRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLK
KTTPSTAQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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