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Report for CCDS36670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36670.1 Public Mus musculus 13 Sncb 23 108 98 CCDS HistoryNCBI Gene:104069Re-query CCDS DB by CCDS ID:36670.1Re-query CCDS DB by GeneID:104069See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036825.13 ENSMUSP00000043074.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036825.13Link to Ensembl Protein Viewer:ENSMUSP00000043074.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036825Re-query CCDS DB by Protein ID:ENSMUSP00000043074
Original member Current member EBI ENSMUST00000134110.1 ENSMUSP00000116296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134110.1Link to Ensembl Protein Viewer:ENSMUSP00000116296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134110Re-query CCDS DB by Protein ID:ENSMUSP00000116296
Original member Current member NCBI NM_001362407.1 NP_001349336.1 Accepted alive Link to Nucleotide Sequence:NM_001362407.1Link to Protein Sequence:NP_001349336.1Re-query CCDS DB by Nucleotide ID:NM_001362407Re-query CCDS DB by Protein ID:NP_001349336Link to BLAST:NP_001349336.1
Original member Current member NCBI NM_033610.3 NP_291088.1 Accepted alive Link to Nucleotide Sequence:NM_033610.3Link to Protein Sequence:NP_291088.1Re-query CCDS DB by Nucleotide ID:NM_033610Re-query CCDS DB by Protein ID:NP_291088Link to BLAST:NP_291088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349336.1 133 Q91ZZ3 133 100% 0 0
NP_291088.1 133 Q91ZZ3 133 100% 0 0

Chromosomal Locations for CCDS 36670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54759509 54759541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54759868 54759957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54762643 54762761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54762922 54762960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54765563 54765683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCTGCAGCTGAGAAAACCAAGC
AGGGGGTCACCGAGGCAGCAGAGAAGACCAAGGAAGGCGTCCTCTATGTCGGAAGCAAGACCAGTGGAGT
GGTACAAGGTGTAGCCTCAGTGGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGAGCTGTGTTC
TCTGGGGCTGGGAACATTGCAGCAGCCACGGGCCTGGTGAAAAAGGAAGAGTTCCCCACAGACCTGAAGC
CAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGATGGAACCAGAAGGGGAAAG
TTATGAGGACTCACCCCAGGAGGAATACCAGGAATACGAGCCAGAGGCGTAA

Translation (133 aa):
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTSGVVQGVASVAEKTKEQASHLGGAVF
SGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDSPQEEYQEYEPEA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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