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Report for CCDS36624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36624.1 Public Mus musculus 13 D130043K22Rik 23 108 98 CCDS HistoryNCBI Gene:210108Re-query CCDS DB by CCDS ID:36624.1Re-query CCDS DB by GeneID:210108See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006893.8 ENSMUSP00000006893.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006893.8Link to Ensembl Protein Viewer:ENSMUSP00000006893.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006893Re-query CCDS DB by Protein ID:ENSMUSP00000006893
Original member Current member NCBI NM_001081051.2 NP_001074520.1 Accepted alive Link to Nucleotide Sequence:NM_001081051.2Link to Protein Sequence:NP_001074520.1Re-query CCDS DB by Nucleotide ID:NM_001081051Re-query CCDS DB by Protein ID:NP_001074520Link to BLAST:NP_001074520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074520.1 1081 Q5SZV5 1081 100% 0 0

Chromosomal Locations for CCDS 36624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24854501 24854555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24856652 24857427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24857921 24858110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24862638 24862736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24863594 24863691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24864733 24864820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24867089 24867181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24871254 24871386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24872219 24872447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24875909 24876032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24877935 24878067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24879596 24879744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24880770 24880921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24882541 24882679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24883741 24883900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24885578 24885720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24887836 24887958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24889824 24889914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24893361 24893452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24899621 24899799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3246 nt):
ATGGTGTCCCCACCAGGAGTACTGTCTTCATTGCTGCTGCTGGCAGCCATGGCAGGAGGCAGTTCTCAGC
AGTGCTCTGAGGGCAGGACTTACTCCGATGCCATCATTTCACCTAACCCGGAAACCATCAGAATCATGCG
GGTGTCTCAAACCTTCTCCGTGGGAGACTGCACGGCCGCTTGCTGTGACTTGCTCACCTGTGACCTGGCC
TGGTGGTTTGAGGGCAGCTGCTATCTGGTGAAATGCATGCGCTCGGAGAATTGCGAGCCCAGGACCACAG
GCCCCATCCGGTCTTACCTCACTTTCGTGCGCAGACCTGTCCAGAGGCCCGGGCAGCTGCTGGACTATGG
AGACATGATGCTGAGCAGGGGCTCCCCCTCAGGAGCTTGGGGAGACTCCCTTGAGGACCTCAGGAAGGAC
TTGCCCTTTCTTGGCAAAGACGGGGGACCAGAGGAGACCACTGAGTACTCAGATGAATACAAAGACCTGG
AGCGGGGCCTCCTGCAGCCCTCCAACCAGCAAGACCCTAGAGGTAGCGCAGAGTACCCCGACTGGAGCCT
GCTGCCCAGCAACGAGGGAGGTTTCAATGCTACAGCTACAGGAGACAACTCAGCTGCTTCCATGGAGAAG
CTGCAGGATCCCACGCCCCACCCACTGGACCAGGAGCAGCTGCAGGCCCTGAATGAGTCGACTTGGTCCC
CTACACCCGGGCACTCTTCAATAAGCAGTGTGTGGCCTTCCTCTGCGAGCCCATTACCTACAGAGGAGGG
ACTGGAAGGAGAAGAGACTTTACAGCTCCAAGAACAACCGAGCAATAGCTCTGGAAAAGAGGTTCCAATG
CCTTCCCATAATCCTTCCCCTGCCAGCCTGGAGTCTAGCCCAGCCACGACGGAAAAAAACTCCAACTTTA
CAGTCACGCCACGGAGCAGAAAACACAGCACCCCAACTTTTCCTACCAGTACAGTCCTCACTGGGCTAAC
CCCTCCTCCGTGGCCCTTGTCACCTACTGCTTCCAGGACAGTAAAGGCGCTTGCTGTGTCTGCTGGAGAT
AACCTAGTACTAACCTTACCGGACAGAGAAGCAGAACTGAAGGCCTCTGTTGAACCAGCGCCCCCTGCAG
ATACAACTTACTCCTATGAATGGAGTTTAATGAGCCACCCAGTAGACTTCCAAGGTAAAATCAAACAAGA
AAACAAGCCGACTCTTCACCTCTCTCAATTATCTGTGGGACTCTATGCCTTCAGAGTGGCTGTTTCTAGT
GAGAATGCATTTGGAGAAGGCTATGTCAATGTCACGGTTATGCCAGCTGCAAGAGTCAACCAGCCACCTG
TAGCTGTTGTTTCTCCCCAGACACAAGAGCTCAGTGTGCCTTTGACCTCAGCCCTGATCGATGGCAGCCA
AAGTACAGATGATACTGAAATAGTGAGTTACCACTGGGAAGAAGTCGACGGGCCCTTCCTAGGAGAGGAG
TTTCCAGCTGACACCCCAATCTTACGATTGTCGAACCTAGTTCCTGGTAACTACACCTTTAGGTTGACCA
TCACAGACTCGGATGGCGCTACCAACTCCACCACTGCATCCCTCGTCATCCGTGATGCCGTGGACTACCC
ACCCGTTGCCAATGCAGGGCCAAATCAGACCATCACTTTGCCCCAAAACACCATCATTCTGAATGGGAAC
CAGAGCAGTGATGATCACCAGATTGTTCTCTATGAGTGGTTCGCAGGCCCTGGCGGTGAGAGCAAAGAGA
TGGTCATGCAGGGAGCGCAGACCCCATACCTTCACTTGTCTGAGCTGCAGGAAGGAGAGTACACATTTCA
GCTGATGGTGACGGATTCCTCGGGACAGCAATCCACCGCTTTGGTCGCTGTGACTGTCCAGGCTGAGAAC
AACCAGGCTCCGGTGGCCGTGGCAGGCCCCGACAAGGAGCTGGTTTTCCCGGTGCAGAGTGCTACACTGG
ATGGGAGCCGGAGCAGTGACGATCACGGCATTGTCTGCTATCACTGGGAGCACATCAGAGGCCCCAGTGC
AGTGGAGATGGAGAATGTGGACAAAGCCATAGCCACTGTCACCGGCCTTCAGGTGGGTATCTACCACTTC
CGGTTAACCGTGAGAGACCAGCAGGGTCTGAGCAGCACGTCCACCCTCACTGTGGCTGTGAAGAAGGAAA
ATAACAGCCCTCCCAGAGCCCAGGCTGGTGGCAGACATGTTCTTATACTTCCCAATAATTCCATTACTTT
GGATGGTTCAAGGTCTACTGATGACCGAGGAATTGTGTCCTATCTGTGGATCCGGGATGGCCAGAGTCCA
GCTGCCGGAGATGTCATTGGAGGCTCTGACCACAGGGCAGCTCTGCAGCTCACCAATCTGGTGGAAGGCG
TCTACACTTTTCACTTGCTAGTCACTGACAGTCAGGGGGCCTCGGACTCAGACGCGGCCACTGTGGAGGT
GCTGCCAGACCCCAAGAAGGATGGCCTGGTGGAGTTGATCCTGCAGGTTGGTGTTGAGCAGCTGACAGAG
CAGCAGAAGGAGACTCTAGTGAGGCAGCTGGCTGTGCTCCTGAACGTGCTAGACTCAGACGTGAAGGTGT
TGAAGATCCAGGCTCACACGGATGTCAGCACTGTGATTGTATTTTATGTACAGAGTGGATCACCTTTCAA
GGTTCTCAGAGCTGCTGCTGTGGCCCGGAATCTGCACAAGCGGCTTTCCAAGGAGAAGGAGGCTTTCCTG
CTTTTCAAGGTCTTGAGGGTAGACACAGCAGGGTGCCTTCTCAAGTGTTCAGGCCACGGTCACTGTGACC
CCATCACGAAGCGCTGCATCTGCTCCCAGCTGTGGATGGAGAACCTCATACAGCGGTACATGTGGGATGG
AGAGAGCAACTGTGAGTGGAGTGTATTCTATGTGGCAGCTCTGGCATTGACACTAACACTGCTAACTGGA
GCTGTGTCTTGGCTGTGCATCTGCTGCTGCAGGAGACGGAAAAGGACTAAGATCCGGAAGAAAACCAAGT
ATACCATCCTAGACAGCATGGACGAACAGGAAAGAATGGAACTGAGGCCCAAGTACGGTATCAAGCACAG
GAGCACGGAGCACAACTCCAGTCTGATGGTGTCGGAGTCTGAGTTTGAAAGCGACCAGGACACGCTATTC
AGCCGAGAGAGGATGGAGAGAGGAGTCCTGAAGGGTTCCCTGAATGGCTGTGCCAGAAATGGAGTTTCCT
TCGGTTACTACTCAAAGGACAGATAA

Translation (1081 aa):
MVSPPGVLSSLLLLAAMAGGSSQQCSEGRTYSDAIISPNPETIRIMRVSQTFSVGDCTAACCDLLTCDLA
WWFEGSCYLVKCMRSENCEPRTTGPIRSYLTFVRRPVQRPGQLLDYGDMMLSRGSPSGAWGDSLEDLRKD
LPFLGKDGGPEETTEYSDEYKDLERGLLQPSNQQDPRGSAEYPDWSLLPSNEGGFNATATGDNSAASMEK
LQDPTPHPLDQEQLQALNESTWSPTPGHSSISSVWPSSASPLPTEEGLEGEETLQLQEQPSNSSGKEVPM
PSHNPSPASLESSPATTEKNSNFTVTPRSRKHSTPTFPTSTVLTGLTPPPWPLSPTASRTVKALAVSAGD
NLVLTLPDREAELKASVEPAPPADTTYSYEWSLMSHPVDFQGKIKQENKPTLHLSQLSVGLYAFRVAVSS
ENAFGEGYVNVTVMPAARVNQPPVAVVSPQTQELSVPLTSALIDGSQSTDDTEIVSYHWEEVDGPFLGEE
FPADTPILRLSNLVPGNYTFRLTITDSDGATNSTTASLVIRDAVDYPPVANAGPNQTITLPQNTIILNGN
QSSDDHQIVLYEWFAGPGGESKEMVMQGAQTPYLHLSELQEGEYTFQLMVTDSSGQQSTALVAVTVQAEN
NQAPVAVAGPDKELVFPVQSATLDGSRSSDDHGIVCYHWEHIRGPSAVEMENVDKAIATVTGLQVGIYHF
RLTVRDQQGLSSTSTLTVAVKKENNSPPRAQAGGRHVLILPNNSITLDGSRSTDDRGIVSYLWIRDGQSP
AAGDVIGGSDHRAALQLTNLVEGVYTFHLLVTDSQGASDSDAATVEVLPDPKKDGLVELILQVGVEQLTE
QQKETLVRQLAVLLNVLDSDVKVLKIQAHTDVSTVIVFYVQSGSPFKVLRAAAVARNLHKRLSKEKEAFL
LFKVLRVDTAGCLLKCSGHGHCDPITKRCICSQLWMENLIQRYMWDGESNCEWSVFYVAALALTLTLLTG
AVSWLCICCCRRRKRTKIRKKTKYTILDSMDEQERMELRPKYGIKHRSTEHNSSLMVSESEFESDQDTLF
SRERMERGVLKGSLNGCARNGVSFGYYSKDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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