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Report for CCDS36618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36618.1 Public Mus musculus 13 Vmn1r223 23 108 98 CCDS HistoryNCBI Gene:100036518Re-query CCDS DB by CCDS ID:36618.1Re-query CCDS DB by GeneID:100036518See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091719.1 ENSMUSP00000089312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091719.1Link to Ensembl Protein Viewer:ENSMUSP00000089312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091719Re-query CCDS DB by Protein ID:ENSMUSP00000089312
Original member Current member EBI ENSMUST00000235331.1 ENSMUSP00000157467.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235331.1Link to Ensembl Protein Viewer:ENSMUSP00000157467.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235331Re-query CCDS DB by Protein ID:ENSMUSP00000157467
Original member Current member EBI ENSMUST00000238002.1 ENSMUSP00000158015.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238002.1Link to Ensembl Protein Viewer:ENSMUSP00000158015.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238002Re-query CCDS DB by Protein ID:ENSMUSP00000158015
Original member Current member EBI ENSMUST00000236495.1 ENSMUSP00000158339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236495.1Link to Ensembl Protein Viewer:ENSMUSP00000158339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236495Re-query CCDS DB by Protein ID:ENSMUSP00000158339
Original member Current member NCBI NM_001083311.1 NP_001076780.1 Accepted alive Link to Nucleotide Sequence:NM_001083311.1Link to Protein Sequence:NP_001076780.1Re-query CCDS DB by Nucleotide ID:NM_001083311Re-query CCDS DB by Protein ID:NP_001076780Link to BLAST:NP_001076780.1

Chromosomal Locations for CCDS 36618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23249238 23250323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTCAATGGAACAAAGAACAGAAGGTCCAAGAATAAAAGCAGGTATCTGTAAGCAAAAAAATCTGTGCA
TTTACATAATACACTGTTCATTCCACGGAAGAAAACAGAAAACCCACAGACATGAACTAGATCATGCTTA
CTTCCTTGTGTTTCTCAGGTTTTTCCTAGCTTTAGCCATGAAGATAATTTGGAGTGACCTCATCCAGAAA
ATAATTTTCATTTCACTTATTGGACTTGGAGTTTTAGGAAACATCATCTTATTTGTGAGACATTTATATA
CTTTCATCATGGGTCCTGAGAACAAAAATATAGATGTTATTCTCATCCACTTGGCTTTTGTAAACACAAT
CATTATTTATTGCATAGGGGTCAGAGACATAGCCACAATTTTTTACATCAGAAACTTCCTAGGTGATGTT
GGTTGTAAAACTATAATTTATCTAGAAAGGGTTGCCCGTGGCCTCTCCATCTGCACCACCTGTCTCCTCA
GCATGGTTCAGGCTGTCACCATCAGTCCCAGGACCACACTGTGGAGAAAGCTCAAACCACAGACAGCATG
GCATGTTATTGCCTTTCTCCTCCTCTTTTGGATCTTTAATTCCCTCATAAGCTCCAATTTGCTGCACTAT
ATCACAGTAGGCAGTAGCATGAACAGTTCTGAAGTTGGAATGTTTACTGGATATTGTTATATGCTACCAT
CCAGGCACACAGTTAAGTGGCTGTTCCTCTCTCTCATGACTCTCCGTGATGTCATTTTCCAGGGTCTCAT
GGGCTGGAGCAGTGGGTCCATGGCTCTCCATCTGTATAAGCATCACAAGCGTGTCCTCTATCTTTACAGC
TCCAGGTCTGCAAACAATTCTAGGCCAGAAATCAGAGCTACCCAGAGGGTTCTCACTCTCATGACCTGTT
TCCTTTTCTTTTATTTGGCAGATTTTATTTTCTCCTTATACACAGGTTCCACAGTGACACATGATTCCAC
AATACTAAATATTAAAGCATTTTTAGTACTTAATTATGCTGGTCTCAGCCCCTTTGTCCTGATCACTGGG
AATGTCCATGATGCTAAGCCCTGCTGTGTCCCCTGA

Translation (361 aa):
MSMEQRTEGPRIKAGICKQKNLCIYIIHCSFHGRKQKTHRHELDHAYFLVFLRFFLALAMKIIWSDLIQK
IIFISLIGLGVLGNIILFVRHLYTFIMGPENKNIDVILIHLAFVNTIIIYCIGVRDIATIFYIRNFLGDV
GCKTIIYLERVARGLSICTTCLLSMVQAVTISPRTTLWRKLKPQTAWHVIAFLLLFWIFNSLISSNLLHY
ITVGSSMNSSEVGMFTGYCYMLPSRHTVKWLFLSLMTLRDVIFQGLMGWSSGSMALHLYKHHKRVLYLYS
SRSANNSRPEIRATQRVLTLMTCFLFFYLADFIFSLYTGSTVTHDSTILNIKAFLVLNYAGLSPFVLITG
NVHDAKPCCVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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