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Report for CCDS36579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36579.1 Public Mus musculus 12 Sp4 23 108 98 CCDS HistoryNCBI Gene:20688Re-query CCDS DB by CCDS ID:36579.1Re-query CCDS DB by GeneID:20688See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222314.1 ENSMUSP00000152603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222314.1Link to Ensembl Protein Viewer:ENSMUSP00000152603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222314Re-query CCDS DB by Protein ID:ENSMUSP00000152603
Original member Current member NCBI NM_009239.4 NP_033265.4 Accepted alive Link to Nucleotide Sequence:NM_009239.4Link to Protein Sequence:NP_033265.4Re-query CCDS DB by Nucleotide ID:NM_009239Re-query CCDS DB by Protein ID:NP_033265Link to BLAST:NP_033265.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033265.4 782 Q62445 782 99.8721% 0 1

Chromosomal Locations for CCDS 36579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118238147 118238394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118254410 118254609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118261727 118261955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118298638 118300192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118300699 118300808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118301227 118301233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGAGCGATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCT
CTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAGGACTCTCAGCCCTCTCCTCTGGC
TTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATT
ATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAGCCACAGCAGCTAGAACTGGTGACGACGC
AGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCA
GCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCA
GGTAATCCTTCCACCCCTAATCAATTTCAAGTCATACAAGTACAAAACCCAAGCGGTAGTGTACAGTACC
AAGTGATCCCCCAACTTCAGACGGTGGAAGGCCAGCAAATTCAAATCAACCCAACTAGTAGTTCATCTCT
ACAGGATTTGCAGGGTCAAATTCAGCTCATTTCTGCAGGTAATAATCAAGCTATCCTCACGGCTGCTAAC
AGGACAGCTTCTGGGAATATCCTTGCTCAAAACCTGGCAAATCAGACAGTTCCAGTACAAATTAGACCTG
GCGTTTCAATACCATTGCAATTGCAGACCCTTCCTGGTACTCAGGCTCAAGTTGTAACAACCCTACCAAT
TAACATTGGAGGAGTGACTTTAGCTTTGCCAGTAATAAATAACGTGACTGCTGGAGGAGGGACTGGACAA
GTCGGCCAGCCTACTACTACTACTGACAGTGGGACTTCCAATGGGAATCAGTTAGTTTCTACGCCCACCA
CCAGCACTGCTCCCGCCAGTACTATGCCTGAATCGCCCTCCTCCTCTACTACCTGCACAACCACCGCATC
AACAACTCTGACGAGCAGTGACACATTAGTGAGCTCAGCAGATACAGGCCAGTATGCAAGCACATCAGCC
AGTAGTTCTGAACGCACCATTGAAGAACCACAGACACCTGCTGCTACTGAGTCTGAAGCCCAGAGCTCCA
GCCAGCTTCAGTCCAACGGAATTCAGAATGCACAAGACCAGTCAAATTCCCTTCAACAAGTACAGATTGT
AGGCCAGCCTATCCTGCAGCAAATCCAGATCCAGCAGCCTCAGCAGCAGATTATTCAAGCTATCCCACCA
CAGTCATTTCAGCTCCAGTCAGGGCAGACAATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAAC
TTCAAGCAGTAAACCCGACTCAGGTACTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCAGCTG
GCAAACTGTCCAGGTCCAGAATATTCAAAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAG
CAGTTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACTCTTGCTCAGATTGCTCCTGTGGCTGTTG
CTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGC
CAACCTGGGTGCTGCGGGTGTTCAAGTTCAGGGAGTTCCAGTAACAATCACTAGTGTTGCAGGTCAACAG
CAAGGACAGGATGGAGTGAAAGTCCAACAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATTG
CTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGAC
CTCTGATGCAGAGGTGCAACCTGGCAAGAGGCTCCGAAGAGTTGCCTGCTCCTGTCCTAACTGTAGGGAA
GGAGAAGGAAGGGGCAGCAGTGAACCAGGAAAGAAGAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGA
AAGTATATGGCAAGACCTCTCACCTCCGAGCACATCTCCGATGGCACACTGGAGAAAGACCGTTCATATG
CAACTGGATGTTTTGTGGCAAAAGATTCACAAGGAGCGATGAGCTTCAGAGACACAGAAGGACCCACACA
GGTGAAAAGAGATTTGAATGTCCAGAGTGTTCTAAAAGGTTTATGCGGAGTGATCACCTATCCAAGCATG
TCAAAACTCACCAGAATAAGAAAGGAGGTGGGACAGCTCTTGCCATTGTTACCTCCGGAGAACTGGACTC
ATCTGTTACAGAGGTGCTTGGCTCTCCACGGATTGTCACGGTTGCCGCCATTTCCCAAGATTCGAATCCA
GCAACTCCCAATGTTTCAACAAACATGGAAGAATTCTGA

Translation (782 aa):
MSDQKKEEEEEAAAAMATEGGKTSEPENNNKKPKTSGSQDSQPSPLALLAATCSKIGTPGENQATGQQQI
IIDPSQGLVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKENNVSQPASSSSSSSSSNNGSSSPTKTKS
GNPSTPNQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQINPTSSSSLQDLQGQIQLISAGNNQAILTAAN
RTASGNILAQNLANQTVPVQIRPGVSIPLQLQTLPGTQAQVVTTLPINIGGVTLALPVINNVTAGGGTGQ
VGQPTTTTDSGTSNGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTTLTSSDTLVSSADTGQYASTSA
SSSERTIEEPQTPAATESEAQSSSQLQSNGIQNAQDQSNSLQQVQIVGQPILQQIQIQQPQQQIIQAIPP
QSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQVLIRAPTLTPSGQISWQTVQVQNIQSLSNLQVQNAGLSQ
QLTITPVSSSGGTTLAQIAPVAVAGAPITLNTAQLASVPNLQTVSVANLGAAGVQVQGVPVTITSVAGQQ
QGQDGVKVQQATIAPVTVAVGGIANATIGAVSPDQLTQVHLQQGQQTSDAEVQPGKRLRRVACSCPNCRE
GEGRGSSEPGKKKQHVCHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHT
GEKRFECPECSKRFMRSDHLSKHVKTHQNKKGGGTALAIVTSGELDSSVTEVLGSPRIVTVAAISQDSNP
ATPNVSTNMEEF


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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