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Report for CCDS36517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36517.1 Public Mus musculus 12 Galc 23 108 98 CCDS HistoryNCBI Gene:14420Re-query CCDS DB by CCDS ID:36517.1Re-query CCDS DB by GeneID:14420See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021390.8 ENSMUSP00000021390.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021390.8Link to Ensembl Protein Viewer:ENSMUSP00000021390.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021390Re-query CCDS DB by Protein ID:ENSMUSP00000021390
Original member Current member NCBI NM_008079.4 NP_032105.2 Accepted alive Link to Nucleotide Sequence:NM_008079.4Link to Protein Sequence:NP_032105.2Re-query CCDS DB by Nucleotide ID:NM_008079Re-query CCDS DB by Protein ID:NP_032105Link to BLAST:NP_032105.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032105.2 684 P54818 684 100% 0 0

Chromosomal Locations for CCDS 36517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98203941 98204087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98207394 98207470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98208711 98208874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98212982 98213159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98214333 98214483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98216251 98216337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98222600 98222689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98227168 98227295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98231416 98231540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98234242 98234397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98242642 98242772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98246254 98246292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98252010 98252149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98254165 98254278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98256627 98256690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98256872 98256940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98259135 98259329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGCTAACAGCCAACCTAAGGCTTCCCAGCAACGCCAAGCAAAAGTCATGACCGCCGCCGCGGGCTCGG
CGAGCCGTGTTGCGGTGCCCTTATTGTTGTGTGCGCTGCTAGTGCCCGGTGGCGCCTACGTGCTAGACGA
CTCCGACGGGCTGGGCCGGGAGTTCGATGGCATCGGCGCAGTCAGCGGCGGCGGGGCAACCTCCCGGCTT
CTAGTAAATTACCCAGAGCCCTATCGTTCTGAAATACTGGATTATCTATTTAAGCCAAACTTTGGTGCCT
CTTTGCATATTCTAAAAGTGGAGATAGGTGGTGATGGACAAACAACAGATGGCACTGAACCCTCGCACAT
GCACTATGAGCTAGATGAGAATTATTTCCGAGGCTATGAGTGGTGGCTAATGAAGGAAGCTAAGAAGCGG
AACCCAGATATTATACTTATGGGGTTGCCATGGTCATTCCCTGGATGGCTGGGCAAAGGCTTCAGCTGGC
CTTATGTAAATCTTCAGCTCACTGCCTACTATGTTGTAAGATGGATTTTGGGTGCCAAGCATTATCATGA
CCTGGACATTGATTATATTGGGATTTGGAATGAAAGGCCGTTTGACGCCAACTATATAAAGGAATTAAGA
AAAATGCTGGATTATCAAGGTCTCCAGCGAGTGAGAATCATAGCGAGCGATAATCTCTGGGAGCCGATTT
CCTCTTCCTTGCTGCTGGACCAGGAACTCTGGAAGGTGGTTGATGTTATAGGAGCTCACTATCCTGGAAC
CTACACAGTGTGGAATGCAAAGATGTCAGGGAAGAAGCTGTGGTCATCTGAAGATTTTAGCACTATCAAC
AGTAATGTTGGCGCAGGCTGTTGGAGTCGCATATTGAACCAGAATTACATCAATGGCAATATGACCTCCA
CAATTGCTTGGAATTTGGTGGCTAGTTACTATGAAGAGTTGCCTTATGGACGAAGTGGGTTGATGACGGC
CCAGGAGCCATGGAGTGGACATTATGTCGTAGCATCTCCTATCTGGGTATCAGCTCACACAACCCAGTTT
ACTCAACCAGGCTGGTATTACCTGAAGACAGTGGGCCATCTAGAGAAAGGAGGAAGTTATGTTGCTCTGA
CTGATGGCTTGGGAAACCTCACCATCATCATTGAAACTATGAGTCATCAACATTCTATGTGTATACGGCC
ATATCTGCCATATTATAATGTCTCACATCAGCTGGCTACCTTCACTCTAAAGGGATCTTTGAGAGAAATA
CAAGAGCTGCAGGTGTGGTATACCAAGCTGGGAACTCCGCAGCAGAGACTTCATTTTAAACAACTGGATA
CTCTATGGCTCCTTGACGGCAGCGGCAGTTTCACACTGGAACTGGAGGAGGACGAGATATTTACGCTCAC
CACTCTGACCACAGGTCGCAAAGGCAGCTACCCTCCCCCTCCCAGCTCGAAGCCCTTCCCAACCAACTAC
AAGGATGATTTCAATGTTGAGTACCCACTTTTTAGTGAAGCTCCGAATTTTGCTGATCAGACTGGCGTGT
TTGAGTACTACATGAATAATGAAGACCGTGAGCACCGCTTCACGCTGCGCCAAGTTCTCAACCAACGACC
TATTACCTGGGCTGCAGACGCTTCCAGCACAATCAGTGTTATAGGCGATCACCACTGGACCAACATGACT
GTGCAGTGCGATGTTTATATAGAGACCCCTCGGAGCGGCGGCGTATTCATTGCTGGAAGAGTGAATAAAG
GTGGAATCTTGATTAGAAGTGCTACAGGAGTCTTTTTCTGGATTTTTGCAAATGGCTCTTACAGAGTCAC
AGCTGACCTGGGTGGATGGATAACGTATGCTTCAGGACATGCGGACGTTACAGCTAAACGATGGTACACA
CTCACCTTAGGCATTAAGGGTTATTTCGCCTTTGGTATGTTGAACGGCACGATCCTATGGAAAAACGTCC
GTGTGAAATACCCAGGGCATGGCTGGGCTGCGATCGGAACACACACCTTCGAGTTTGCGCAGTTTGACAA
CTTTCGCGTGGAAGCTGCTCGCTAG

Translation (684 aa):
MANSQPKASQQRQAKVMTAAAGSASRVAVPLLLCALLVPGGAYVLDDSDGLGREFDGIGAVSGGGATSRL
LVNYPEPYRSEILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYELDENYFRGYEWWLMKEAKKR
NPDIILMGLPWSFPGWLGKGFSWPYVNLQLTAYYVVRWILGAKHYHDLDIDYIGIWNERPFDANYIKELR
KMLDYQGLQRVRIIASDNLWEPISSSLLLDQELWKVVDVIGAHYPGTYTVWNAKMSGKKLWSSEDFSTIN
SNVGAGCWSRILNQNYINGNMTSTIAWNLVASYYEELPYGRSGLMTAQEPWSGHYVVASPIWVSAHTTQF
TQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHQHSMCIRPYLPYYNVSHQLATFTLKGSLREI
QELQVWYTKLGTPQQRLHFKQLDTLWLLDGSGSFTLELEEDEIFTLTTLTTGRKGSYPPPPSSKPFPTNY
KDDFNVEYPLFSEAPNFADQTGVFEYYMNNEDREHRFTLRQVLNQRPITWAADASSTISVIGDHHWTNMT
VQCDVYIETPRSGGVFIAGRVNKGGILIRSATGVFFWIFANGSYRVTADLGGWITYASGHADVTAKRWYT
LTLGIKGYFAFGMLNGTILWKNVRVKYPGHGWAAIGTHTFEFAQFDNFRVEAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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