NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36396.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36396.2 Public Mus musculus 12 Dtnb 23 108 98 CCDS HistoryNCBI Gene:13528Re-query CCDS DB by CCDS ID:36396.2Re-query CCDS DB by GeneID:13528See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 36396.2
This CCDS was updated because the previous transcript is a nonsense-mediated mRNA decay (NMD) candidate, and is unlikely to produce a protein. The new transcript would not be subject to NMD and encodes a protein with homology support in human (NP_899204.1).

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36396.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077930.12 ENSMUSP00000077085.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077930.12Link to Ensembl Protein Viewer:ENSMUSP00000077085.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077930Re-query CCDS DB by Protein ID:ENSMUSP00000077085
Original member Current member NCBI NM_007886.3 NP_031912.2 Accepted alive Link to Nucleotide Sequence:NM_007886.3Link to Protein Sequence:NP_031912.2Re-query CCDS DB by Nucleotide ID:NM_007886Re-query CCDS DB by Protein ID:NP_031912Link to BLAST:NP_031912.2

Chromosomal Locations for CCDS 36396.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3589172 3589238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3591906 3591986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3596649 3596862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3617606 3617691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3632810 3632964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3643917 3644022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3648223 3648389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3686738 3686862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3718412 3718489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3732618 3732707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3734939 3735026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3748425 3748510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3749470 3749583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3751811 3751907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3772587 3772746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3773551 3773640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3779619 3779623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGATTGAGGAAGGCGGGAACAAGCGGAAGACCATGGCGGAGAAGAGGCAGCTCTTCATAGAAATGCGTG
CTCAGAATTTTGATGTCATACGACTATCAACGTACAGAACAGCTTGCAAGTTACGATTTGTACAGAAGCG
ATGCAACCTTCATCTTGTTGATATCTGGAATATGATCGAAGCTTTCCGAGACAATGGCCTTAACACGCTG
GACCACAGCACGGAGATCAGCGTGTCCCGCCTGGAGACCGTCATCTCGTCCATCTACTATCAGTTGAACA
AGCGCCTTCCTTCTACTCACCAGATCAGCGTGGAGCAGTCCATCAGTCTCCTACTCAATTTCATGGTCGC
CGCCTACGACAGTGAGGGCCGAGGCAAGTTGACCGTGTTTTCAGTTAAAGCTATGTTAGCAACCATGTGT
GGTGGAAAAATGCTGGACAAATTGAGATACATTTTCTCCCAGATGTCAGATTCCAATGGCTTAATGATGT
TTGGAAAGCTTGACCAGTTCCTGAAGGAAGCCCTGAAGCTCCCAACAGCTGTCTTTGAAGGGCCATCCTT
TGGTTACACAGAGCATGCAGTCCGTACCTGTTTTCCGCAGCAGAAGAAGATAATGCTGAATATGTTTTTA
GACACCATGATGGCTGATCCTCCTCCCCAGTGCCTTGTCTGGCTACCTCTCATGCACAGGCTTGCCCATG
TTGAGAATGTCTTCCATCCTGTGGAATGCTCCTACTGTCACTGCGAGAGCATGATGGGCTTCCGATACCG
ATGCCAGCAGTGCCACAACTACCAGCTCTGCCAGAACTGCTTTTGGCGTGGCCATGCCAGCGGCGCTCAC
AGCAACCAGCACCAGATGAAGGAGCATTCCTCTTGGAAATCCCCTGCAAAGAAGCTGAGCCATGCAATTA
GTAAATCTTTGGGATGTGTACCCTCCAGAGAACCCCCACATCCTGTTTTTCCTGAGCAACCAGAGAAACC
ACTTGACCTTGCACATCTAGTTCCTCCTCGCCCTCTGACCAATATGAATGACACCGTGGTTAGTCACATG
TCCTCTGGAGTGCCCACTCCCACCAAGAGGTTACAGTATAGCCAAGACATGCCCAATCTCTTGGCCGATG
AGCATGCGCTGATAGCCTCCTATGTGGCTCGTCTGCAACACTGCACACGTGTGCTGGACAGTCCTAGCCG
ACTGGATGAGGAACACCGGCTTATAGCCCGCTATGCTGCCCGGCTAGCTGCAGAGGCAGGAAACATGACT
CGTCCTCCCACTGATGCCAGCTTCAACTTTGATGCCAACAAACAACAGAGACAGCTCATTGCAGAGCTGG
AGAACAAGAACAGAGAGATCCTGCAGGAGATCCAGCGCCTGCGGCTGGAGCATGAACAGGCTTCCCAGCC
CACCCCTGAGAAGGCTCAGCAGAACCCCATGCTGCTAGCAGAGCTGCGCTTGCTGAGGCAAAGGAAAGAT
GAGCTGGAGCAAAGGATGTCAGCGCTGCAGGAGAGTAGGCGAGAGCTGATGGTGCAGCTGGAGGGGCTGA
TGAAGTTGCTAAAGGCTCAAGCCACAGGGTCACCACACACATCACCCACCCATGGAGGTGGCCGCCCTAT
GCCCATGCCTGTGCGTTCTACATCTGCTGGCTCCACCCCGACCCACGGCCCGCAGGACTCACTGAGTGGA
GTTGGGGGAGATGTCCAGGAGGCCTTTGCACAAGGTACGAGGAGAAACCTCCGCAATGACTTGCTGGTGG
CTGCTGACTCCATCACCAACACCATGTCCTCCCTGGTGAAGGAGCTCCATTCAGGTTAG

Translation (602 aa):
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDNGLNTL
DHSTEISVSRLETVISSIYYQLNKRLPSTHQISVEQSISLLLNFMVAAYDSEGRGKLTVFSVKAMLATMC
GGKMLDKLRYIFSQMSDSNGLMMFGKLDQFLKEALKLPTAVFEGPSFGYTEHAVRTCFPQQKKIMLNMFL
DTMMADPPPQCLVWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHASGAH
SNQHQMKEHSSWKSPAKKLSHAISKSLGCVPSREPPHPVFPEQPEKPLDLAHLVPPRPLTNMNDTVVSHM
SSGVPTPTKRLQYSQDMPNLLADEHALIASYVARLQHCTRVLDSPSRLDEEHRLIARYAARLAAEAGNMT
RPPTDASFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQNPMLLAELRLLRQRKD
ELEQRMSALQESRRELMVQLEGLMKLLKAQATGSPHTSPTHGGGRPMPMPVRSTSAGSTPTHGPQDSLSG
VGGDVQEAFAQGTRRNLRNDLLVAADSITNTMSSLVKELHSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH