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Report for CCDS36338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36338.1 Public Mus musculus 11 Mpp3 23 108 98 CCDS HistoryNCBI Gene:13384Re-query CCDS DB by CCDS ID:36338.1Re-query CCDS DB by GeneID:13384See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062801.10 ENSMUSP00000055469.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062801.10Link to Ensembl Protein Viewer:ENSMUSP00000055469.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062801Re-query CCDS DB by Protein ID:ENSMUSP00000055469
Original member Current member EBI ENSMUST00000100400.8 ENSMUSP00000097969.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100400.8Link to Ensembl Protein Viewer:ENSMUSP00000097969.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100400Re-query CCDS DB by Protein ID:ENSMUSP00000097969
Original member Current member EBI ENSMUST00000107168.7 ENSMUSP00000102786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107168.7Link to Ensembl Protein Viewer:ENSMUSP00000102786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107168Re-query CCDS DB by Protein ID:ENSMUSP00000102786
Original member NCBI NM_007863.2 NP_031889.2 Updated not alive Link to Nucleotide Sequence:NM_007863.2Link to Protein Sequence:NP_031889.2Re-query CCDS DB by Nucleotide ID:NM_007863Re-query CCDS DB by Protein ID:NP_031889
Current member NCBI NM_007863.3 NP_031889.2 Accepted alive Link to Nucleotide Sequence:NM_007863.3Link to Protein Sequence:NP_031889.2Re-query CCDS DB by Nucleotide ID:NM_007863Re-query CCDS DB by Protein ID:NP_031889Link to BLAST:NP_031889.2

Chromosomal Locations for CCDS 36338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102000553 102000729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102002024 102002146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102004990 102005098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102005347 102005440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102008356 102008436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102008520 102008684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102009643 102009684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102010207 102010227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102011720 102011784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102013315 102013511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102016627 102016701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102018622 102018707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102020472 102020553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102023327 102023464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102023702 102023782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102025077 102025154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102025381 102025499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102025732 102025756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGCCAGTACTGTCTGAAGACTCGGGTTTGCATGAGACCCTGGCACTGCTCACCTCTCAGCTCAGGCCTG
ACTCCAACCACAGGGAGGAGATGGGCTTCCTGAGAGATGTCTTCAGTGAGAAGAGCCTCAGTTATTTAAT
GAAGATTCATGAGAAACTCCGCTATTATGAGAGGCAGAGTCCAACCCCAGTCCTCCACAGCGCCATGGCC
CTTGCTGAGGATGTGATGGAGGAGCTGCAGGCTGCCTCTGTGCACAGTGATGAGCGGGAGCTGCTGCAGC
TGCTGTCCACCCCCCACCTCAGGGCTGTGCTCATGGTCCACGACACGGTTGCCCAGAAGAACTTCGATCC
TGTTCTGCCCCCTCTGCCCGATAACATCGATGAGGATTTTGAAGAGGAGTCGGTGAAGATTGTTCGCTTG
GTGAAGAATAAGGAGCCCCTGGGTGCCACCATCCGACGGGATGAGCATTCGGGGGCTGTTGTGGTGGCCA
GGATCATGCGAGGGGGTGCGGCAGACCGGAGCGGTCTGGTCCACGTTGGCGATGAGCTCCGAGAGGTGAA
TGGGATCGCCGTCCTGCACAAGCGTCCAGACGAGATCAGCCAAATTCTGGCCCAATCCCAGGGATCCATT
ACCCTGAAGATCATCCCTGCCACCCAGGAGGAAGACCGCTTCAAAGACAGCAAGGTATTCATGCGTGCCC
TCTTCCACTATGACCCTCGGGAGGACCGTGCCATCCCCTGCCAGGAGGCTGGCCTGCCCTTCCAGCGGAG
GCAGGTCCTGGAGGTGGTGAGCCAAGATGACCCCACCTGGTGGCAGGCCAAGAGAGTAGGCGACACCAAC
CTTCGAGCTGGCCTCATCCCATCTAAGCAGTTCCAGGAGAGGCGGCTGAGCTACCGGAGAACCACTGGCA
CCTTACCAAGCCCCCAGAACTTCAAAAAGCCCCCCTATGATCAGCCTTGTGACAAAGAGACCTGTGACTG
TGATGGGTACTTTAAAGGACATTATGTGGCTGGTCTTCGGAGAAGCTTCCGGCTGGGCTGCAGGGAGAGG
CTGGGTGGCTCGCAGGAAGCAAAGGTCCCTACAGGAGCTGAGTCTCAGGTGCTGCTGACGTACGAGGAAG
TGGCCAGGTACCAACACCAGCCTGGGGAGCGGCCCCGCCTGGTGGTTCTCATTGGGTCCCTGGGAGCCCA
CCTCCATGAGCTGAAGCAAAGGGTGGTGGCTGAGGACCCCCAGCAGTTTGCCGTTGCAGTTCCACACACC
ACCAGGCCCCGGAAGAGCCACGAGAGAGACGGGGTGGAGTACCATTTTGTCTCCAAGCAAGCGTTTGAGG
CCGACGTACATCACAACAAGTTCCTGGAGCATGGAGAATATAAAGAGAATCTCTACGGCACCAGCCTAGA
GGCCATTCAGGCTGTTATGGCCAAAAACAAAGTGTGTTTGGTGGATGTAGAACCAGAAGCACTAAGACAC
CTGAGGACCCCTGAGTTTAAGCCCTATGTTATATTTGTGAAGCCTGCAATTCAGGAGAGAAGGAAGACGC
CGCCGGTGTCCCCAGACTCTGAGGACATAGCATCTTCACTTGATGAACAGCAGCAAGAGATGGCCGCCTC
TGCTGCCTTCATAGATCAGCACTATGGGCACCTGATAGACACTGTGCTCGTGAGGCAGGACCTGCAGGAG
GCCTGCAGCCAGCTCAGAGCTGTCATAGAGACGCTGAGCAAGGACACTTCCTGGGTACCCATCAGCTGGG
TGAGGTAA

Translation (585 aa):
MPVLSEDSGLHETLALLTSQLRPDSNHREEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAMA
LAEDVMEELQAASVHSDERELLQLLSTPHLRAVLMVHDTVAQKNFDPVLPPLPDNIDEDFEEESVKIVRL
VKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGIAVLHKRPDEISQILAQSQGSI
TLKIIPATQEEDRFKDSKVFMRALFHYDPREDRAIPCQEAGLPFQRRQVLEVVSQDDPTWWQAKRVGDTN
LRAGLIPSKQFQERRLSYRRTTGTLPSPQNFKKPPYDQPCDKETCDCDGYFKGHYVAGLRRSFRLGCRER
LGGSQEAKVPTGAESQVLLTYEEVARYQHQPGERPRLVVLIGSLGAHLHELKQRVVAEDPQQFAVAVPHT
TRPRKSHERDGVEYHFVSKQAFEADVHHNKFLEHGEYKENLYGTSLEAIQAVMAKNKVCLVDVEPEALRH
LRTPEFKPYVIFVKPAIQERRKTPPVSPDSEDIASSLDEQQQEMAASAAFIDQHYGHLIDTVLVRQDLQE
ACSQLRAVIETLSKDTSWVPISWVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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