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Report for CCDS36135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36135.1 Public Mus musculus 11 Havcr2 23 108 98 CCDS HistoryNCBI Gene:171285Re-query CCDS DB by CCDS ID:36135.1Re-query CCDS DB by GeneID:171285See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020668.14 ENSMUSP00000020668.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020668.14Link to Ensembl Protein Viewer:ENSMUSP00000020668.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020668Re-query CCDS DB by Protein ID:ENSMUSP00000020668
Original member Current member NCBI NM_134250.2 NP_599011.2 Accepted alive Link to Nucleotide Sequence:NM_134250.2Link to Protein Sequence:NP_599011.2Re-query CCDS DB by Nucleotide ID:NM_134250Re-query CCDS DB by Protein ID:NP_599011Link to BLAST:NP_599011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599011.2 281 Q8VIM0-1 281 100% 0 0

Chromosomal Locations for CCDS 36135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46455001 46455058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46456256 46456594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46459050 46459133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46466872 46466912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46469470 46469596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46475884 46475920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46479287 46479446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGTTTTCAGGTCTTACCCTCAACTGTGTCCTGCTGCTGCTGCAACTACTACTTGCAAGGTCATTGGAAA
ATGCTTATGTGTTTGAGGTTGGTAAGAATGCCTATCTGCCCTGCAGTTACACTCTATCTACACCTGGGGC
ACTTGTGCCTATGTGCTGGGGCAAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAGTTGCTCAGAACT
GATGAAAGAAATGTGACATATCAGAAATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGACG
TGTCTCTGATCATAAAGAATGTGACTCTGGATGACCATGGGACCTACTGCTGCAGGATACAGTTCCCTGG
TCTTATGAATGATAAAAAATTAGAACTGAAATTAGACATCAAAGCAGCCAAGGTCACTCCAGCTCAGACT
GCCCATGGGGACTCTACTACAGCTTCTCCAAGAACCCTAACCACGGAGAGAAATGGTTCAGAGACACAGA
CACTGGTGACCCTCCATAATAACAATGGAACAAAAATTTCCACATGGGCTGATGAAATTAAGGACTCTGG
AGAAACGATCAGAACTGCTATCCACATTGGAGTGGGAGTCTCTGCTGGGTTGACCCTGGCACTTATCATT
GGTGTCTTAATCCTTAAATGGTATTCCTGTAAGAAAAAGAAGTTATCGAGTTTGAGCCTTATTACACTGG
CCAACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGGAAAATATCTACAC
CATCGAGGAGAACGTATATGAAGTGGAGAATTCAAATGAGTACTACTGCTACGTCAACAGCCAGCAGCCA
TCCTGA

Translation (281 aa):
MFSGLTLNCVLLLLQLLLARSLENAYVFEVGKNAYLPCSYTLSTPGALVPMCWGKGFCPWSQCTNELLRT
DERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIKAAKVTPAQT
AHGDSTTASPRTLTTERNGSETQTLVTLHNNNGTKISTWADEIKDSGETIRTAIHIGVGVSAGLTLALII
GVLILKWYSCKKKKLSSLSLITLANLPPGGLANAGAVRIRSEENIYTIEENVYEVENSNEYYCYVNSQQP
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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