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Report for CCDS36055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36055.1 Public Mus musculus 10 E2f7 23 108 98 CCDS HistoryNCBI Gene:52679Re-query CCDS DB by CCDS ID:36055.1Re-query CCDS DB by GeneID:52679See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073781.11 ENSMUSP00000073453.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073781.11Link to Ensembl Protein Viewer:ENSMUSP00000073453.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073781Re-query CCDS DB by Protein ID:ENSMUSP00000073453
Original member Current member EBI ENSMUST00000173471.7 ENSMUSP00000133494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173471.7Link to Ensembl Protein Viewer:ENSMUSP00000133494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173471Re-query CCDS DB by Protein ID:ENSMUSP00000133494
Original member NCBI NM_001358560.1 NP_001345489.1 Updated not alive Link to Nucleotide Sequence:NM_001358560.1Link to Protein Sequence:NP_001345489.1Re-query CCDS DB by Nucleotide ID:NM_001358560Re-query CCDS DB by Protein ID:NP_001345489
Current member NCBI NM_001358560.2 NP_001345489.1 Accepted alive Link to Nucleotide Sequence:NM_001358560.2Link to Protein Sequence:NP_001345489.1Re-query CCDS DB by Nucleotide ID:NM_001358560Re-query CCDS DB by Protein ID:NP_001345489Link to BLAST:NP_001345489.1
Original member NCBI NM_178609.5 NP_848724.2 Updated not alive Link to Nucleotide Sequence:NM_178609.5Link to Protein Sequence:NP_848724.2Re-query CCDS DB by Nucleotide ID:NM_178609Re-query CCDS DB by Protein ID:NP_848724
Current member NCBI NM_178609.6 NP_848724.2 Accepted alive Link to Nucleotide Sequence:NM_178609.6Link to Protein Sequence:NP_848724.2Re-query CCDS DB by Nucleotide ID:NM_178609Re-query CCDS DB by Protein ID:NP_848724Link to BLAST:NP_848724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345489.1 904 Q6S7F2-1 904 100% 0 0
NP_848724.2 904 Q6S7F2-1 904 100% 0 0

Chromosomal Locations for CCDS 36055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 110746332 110746424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110754081 110754359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110759818 110759986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110763927 110764217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110765616 110765774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110767117 110767251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110774642 110774827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110775319 110775388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110778819 110779302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110780767 110781022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110782198 110782619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110784668 110784838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGAGGTGAATTGTTTAACACTAAAAGACTTGATCAGCCCCAGGCAGACCAGACTAGATTTTGCCATTG
AAGATGCAGAGAACGCACAAAAGGAAAATATATTTGTCGACCGATCAAGGATGACCCCAAAGACACCGAT
GAAGAACGAGCCGATCGACCTGTCAAAGCAAAGAATCTTCACCCCAGACAGAAACCCCATTACTCCAGTA
AAGCCGGTCGACAGGCAGCCGCAGGTGGAGCCCTGGACACCCACAGCCAACCTGAAGATGCTCATCAGCG
CCGCCAGCCCAGACATAAGAGACCGGGAGAAGAAAAAGGAGCTGTTCAGACCCATTGAGAATAAGGAGGA
TGCGTTCGTGAACTCCCTGCAGCTTGACGTGGCCGGTGACGGCGCTGTGGATGAGTATGAGAAGCAAAGG
CCAAGCAGGAAACAGAAGAGCTTGGGGCTGCTGTGCCAGAAGTTTCTAGCTCGCTATCCGAGCTACCCCT
TGTCAACGGAGAAAACCACCATCTCCCTAGATGAGGTCGCCGTCAGTCTCGGCGTGGAAAGGAGACGCAT
CTATGACATCGTAAACGTGCTGGAGTCGCTGCATCTGGTCAGCCGGGTGGCTAAGAATCAGTATGGTTGG
CACGGTCGGCACAGCCTCCCCAAAACCCTGAGGACCCTACAGAGACTGGGAGAGGAACAGAAATACGAGG
AGCAGATGGCCTGCCTCCAGCAGAAGGAGCTGGACCTGATGGGGTATAGGTTCGGAGAACGCAGGAAAGA
CGGGTCTCCGGACCCCCGAGATCCACACCTACTTGATTTTTCCGAAGCCGACTACCCCTCTTCATCTGCA
AACAGTCGAAAAGATAAATCTTTAAGAATTATGAGCCAGAAGTTTGTCATGCTGTTCCTCGTCTCCAAAA
CCAAGATTGTCACCCTGGATGTAGCTGCCAAAATCCTCATAGAAGAAAGCCAAGATACCCCGGACCACAG
CAAATTCAAAACAAAGGTACGGAGGCTCTATGACATAGCCAATGTTCTGACCAGCCTGGCTCTGATAAAG
AAAGTTCACGTAACAGAAGAGCGAGGCCGGAAACCAGCCTTCAAGTGGATCGGGCCTGTGGACTTCAGCT
CCATTGATGAAGAACTGTTGGACGTCTCTGCATCCATCTTACCAGAATTGAAGAAGGAAGCATACGGCCA
GATCCGAGTGTGTGCAAAAGAGAGGCTGGTGCGGTACGGTTCCTTTAACACGGTTCACACGTCTGAGAAG
ATACAGAGAAAAGTGAGCTCAGAACCCAGCAGCCCACAGGGAGAAAGACAAGGGTCAGCCTATTCCCTGG
AAATTGGAAGTCTGGCGGCCATCTACAGACAGAAAGTAGAAGATAATTCGCAGGAGGAAGCCTTTGTCAG
TAACACAGCAGTGCCTCCAGCAAGCATCTTGGACCCCGCCCTCTCCATGGACTCTGAATACTGTGTCAAG
CCTTTAGCCCAGCCAGTATTTTCTGTTGCTCAAACAGATTTGCCGGCCTTCTCTGCGCAGAATGGTCCAA
GCGGACAAGTAGGTGTCCCCGTTCCTTCTGCAGCCTCCGACACAGAGAACTTAAAGCCAGCTCTGCTCGC
CGGCCAGCCCCTGGTCTACGTGCCCTCCACCCAACTCTTCATGCTGTACGGGAGTGTGCAGGAGGGACTG
TCCCCAGAGTCAAGGTCAGAGGAAGATGGTGGTGGCTCCGATGTCCCAGCTGACCTGTCAGTGACACCCT
CTGCTCAGAAGCGCCTGTGTGAGGAGAGAGATCCTCAGGAGGAGGAGGACGAGCCCGCCATGAAAAGACA
AAGTCAGGAATTTGAAGACAGCCCCTTATCCCTAGTTATGCCCAAGAAACCCTCAAGTTCCACAGACCTT
GCCTGTCCTGTGACCATGGGAAACGGGAGCTCTCCACCCCTGGAAGACGCCTGTGTTAAGGGTCAGCTCC
CTGCTGCAGAAGAAGTTACAGGAAAGGCTGCCCCAAACTGCTATGTTGCTTCTGAGTGTGGAAACCCGGC
AAGAAATCCAGACACTGAAAAGCCTTCCAACGAAAACGAGATCACCAAAGACCCCTCGCTGATGCAGTAC
CTGTATGTGCAGTCTCCCGCAGGGTTAAATGGTTTTAACATGGTTTTACCAGGCACCCAGACCCCCCACA
CCGTGGCACCCTCCCCGGCTCAGCTGCCATCCTTCGGCGTACCCTGCATGTTCCTGCAATCCCCAGGCCT
GGGCCCTTTTCCAGTTCTCTATTCTCCCGCAATACCCGGGCCCATTTCTTCAGCCCCCGGCACTCACCCA
AACCCCGGACCCATGAACTTCGGCTTGTCCACCCTGGCATCTGCTTCTCACCTTCTCATCAGCCCGGCAG
CCATGGTCAATCCAAAGCCATCCACCCTCCCCTGTACAGACCCTCAGCTTCGCTGTCAGCCCTCACTCAA
CCTGAACCCCGTGATGCCAGGCTCACACGGCGTCATCCACCCCGAGTCCCCCTGTTACGTGAGACATCCG
GTATCGATGGTAAAGGCAGAGCAGTCCCCTGCACCGGCGACTCCCAAGAGCATCCAACGGAGACATCGGG
AGACGTTCTTCAAGACTCCCGGCAGCCTCGGCGATCCGGTCTTTAGAAGAAAAGAAAGGAACCAATCAAG
AAACACTAGCTCAGCCCAGAGGAGACTAGAAATCTCTAGCAGCGGGCCTGACTAG

Translation (904 aa):
MEVNCLTLKDLISPRQTRLDFAIEDAENAQKENIFVDRSRMTPKTPMKNEPIDLSKQRIFTPDRNPITPV
KPVDRQPQVEPWTPTANLKMLISAASPDIRDREKKKELFRPIENKEDAFVNSLQLDVAGDGAVDEYEKQR
PSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLGVERRRIYDIVNVLESLHLVSRVAKNQYGW
HGRHSLPKTLRTLQRLGEEQKYEEQMACLQQKELDLMGYRFGERRKDGSPDPRDPHLLDFSEADYPSSSA
NSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDTPDHSKFKTKVRRLYDIANVLTSLALIK
KVHVTEERGRKPAFKWIGPVDFSSIDEELLDVSASILPELKKEAYGQIRVCAKERLVRYGSFNTVHTSEK
IQRKVSSEPSSPQGERQGSAYSLEIGSLAAIYRQKVEDNSQEEAFVSNTAVPPASILDPALSMDSEYCVK
PLAQPVFSVAQTDLPAFSAQNGPSGQVGVPVPSAASDTENLKPALLAGQPLVYVPSTQLFMLYGSVQEGL
SPESRSEEDGGGSDVPADLSVTPSAQKRLCEERDPQEEEDEPAMKRQSQEFEDSPLSLVMPKKPSSSTDL
ACPVTMGNGSSPPLEDACVKGQLPAAEEVTGKAAPNCYVASECGNPARNPDTEKPSNENEITKDPSLMQY
LYVQSPAGLNGFNMVLPGTQTPHTVAPSPAQLPSFGVPCMFLQSPGLGPFPVLYSPAIPGPISSAPGTHP
NPGPMNFGLSTLASASHLLISPAAMVNPKPSTLPCTDPQLRCQPSLNLNPVMPGSHGVIHPESPCYVRHP
VSMVKAEQSPAPATPKSIQRRHRETFFKTPGSLGDPVFRRKERNQSRNTSSAQRRLEISSSGPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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