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Report for CCDS36049.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36049.2 Reviewed, update pending Mus musculus 10 Mettl25 23 108 98 CCDS HistoryNCBI Gene:216292Re-query CCDS DB by CCDS ID:36049.2Re-query CCDS DB by GeneID:216292See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 36049.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be found only in mouse, would result in a protein that is 3 aa longer.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 36049.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046638.9 ENSMUSP00000038665.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046638.9Link to Ensembl Protein Viewer:ENSMUSP00000038665.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046638Re-query CCDS DB by Protein ID:ENSMUSP00000038665
Original member NCBI NM_207522.2 NP_997405.2 Updated not alive Link to Nucleotide Sequence:NM_207522.2Link to Protein Sequence:NP_997405.2Re-query CCDS DB by Nucleotide ID:NM_207522Re-query CCDS DB by Protein ID:NP_997405
Current member NCBI NM_207522.3 NP_997405.3 Pending alive Link to Nucleotide Sequence:NM_207522.3Link to Protein Sequence:NP_997405.3Re-query CCDS DB by Nucleotide ID:NM_207522Re-query CCDS DB by Protein ID:NP_997405Link to BLAST:NP_997405.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997405.3 597 Q6NXH8 597 99.8325% 0 1

Chromosomal Locations for CCDS 36049.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 105763360 105763461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105765220 105765291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105765964 105766038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105779588 105779681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105793340 105793413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105794362 105794391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105797225 105797319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105823160 105823310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105825998 105826591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105829848 105829954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105832851 105833015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105841076 105841319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGAGCGTCATGGCGGCGGCCTGCCCTCTGCCCAGGACCCCGGACCTGCCCACGCTGCACGACAAGTTAC
AGGGCTTGCTGAGCTTCCTCAGGGGCGCCCTGGCCATTTCCAGCGCGCACACGGTGGACTTCTACACCAA
GTCGGTCTGGCAGGAGCTGGTCGACCTGCCCCCTGAGAGCGTGCTGGCGGCGCTGAGGGAGTCGGCGGTG
GAGGCCGAGCCGCGCGAGGCAGAGACGGGATCAGGTTTCACTGAGCTCCCCAAAATATTTTGTGAAACTT
CTCAGAAGCTGTTGAGTGTGGAAGCTTTTGCCCGAACTGCAAAGCACTATTCTGTGCAAAACTTGGGACT
GTGCACTCCTTCTGAGCAGTTGCTCACAGCCCTCCAAGGAAATAAAAGGCAGAGAGTTGATGAAAATGTG
AAGGCAATTGAGTTTATGAATACAAAAAAATCTCATGAGGTTCAGGCAATGTCAGAGCTAATCTGCAGTA
TTGCTGATTACTGTGGCTTAAAGCAGATAATTGACGTGGGTTCTGGTAAAGGCTATCTAAGCTCCTTTTT
GTCCTTAAAATATGGTTTGAACGTTTATGGCATCGATTCCTCAAACACTAACACTCACGGCGCGAAGGAG
AGAAACAGGAAGTTGAAGAAGCATTGGAGCCTGTATCACCCTCACTCAAGAGCAGACGCCAACGGCTGGG
CATCAGAAAGGCCCAGAGAGTTGAAAGTGCCAAAGGGAGTGGAGTGTAAGGGGGACGCTGAGAGCGTGCA
GAGGAGCAGGCTTGGGAATCCAGACCTGTCTGCCACCGATGGTTTGCCTGATTTCTCAGGCTCTGCAATT
TCAGTCATCAGAAAACAGCAAAAAAACGTGCTTGCTCAGCCAGCTGAGGAAGAAAATTTGTATTTTGAAG
ATGCCTTTTCTCTCATAGACTTTTTACCTGTTGATGCCATCGAACCTACTTCATCACAGGTGCAGAACAC
AGAAAAGTCTGGACTGAGAAAAGAGAGAAGAAATACGGCATCCAAGGCAAGGGACTCAAGCATATATTCA
CCACTAACCTCTTTCATCACTGCTGATTCACAATTGCATGACATTATTGAAGATCTGGAGGACTGTTTAA
TGGTGGGACTGCATACCTGTGGTGACCTTGCACCCAGTACTCTGCGGATATTTACATCCAAGGCTGAAGT
CAAGGCAGTTTGCAGTGTGGGTTGTTGCTACCATCTCCTATCTGAGGAGTTTGAAAACCAGCATAAAGAT
AGATGTGCTAACGAAAACTGGGGGTTTCCAATGTGCCACTATCTGAAAGAGGAGAGATGGTGCTGCGGCC
GTAATGCAAGAATGTCAGCATGTTTGGCATTGCAGCGGGTTGCAGTTGGCCAAGGGCTGCCTACTGAATC
ACTCTTCTATCGTGCTGTTCTTCAGAATATTATTAAGGATTATTATGGCATCAGCAAATGTGAACAGCAC
GTTGGTAAAATTTATTCCAAATGTTCCTCTTTTCTGGAGTATGTCAGAATGTCTCTAAAGAAGCTTGGAT
TAGATGAGTCCAAGGTCTCTGAAGAAATTATAATGGACTACTATGAGAATTATAAGCCTAGAATGAATGA
GCTAGAGGCATTTAATATGTTGAAAGTTGTTCTGGCTCCTTGCATAGAAACACTGATTCTTCTTGATCGA
CTTTGTTACCTGAAGGAACAGGACGGTGTAGCCTGGTCTGCCCTCGTGAAGTTGTTTGACCCTGTGCAGT
CGCCCAGATGCTACGCTGTCATTGCTCTGAAGAAGCAGTGTGATCGTGGCTGA

Translation (600 aa):
MSVMAAACPLPRTPDLPTLHDKLQGLLSFLRGALAISSAHTVDFYTKSVWQELVDLPPESVLAALRESAV
EAEPREAETGSGFTELPKIFCETSQKLLSVEAFARTAKHYSVQNLGLCTPSEQLLTALQGNKRQRVDENV
KAIEFMNTKKSHEVQAMSELICSIADYCGLKQIIDVGSGKGYLSSFLSLKYGLNVYGIDSSNTNTHGAKE
RNRKLKKHWSLYHPHSRADANGWASERPRELKVPKGVECKGDAESVQRSRLGNPDLSATDGLPDFSGSAI
SVIRKQQKNVLAQPAEEENLYFEDAFSLIDFLPVDAIEPTSSQVQNTEKSGLRKERRNTASKARDSSIYS
PLTSFITADSQLHDIIEDLEDCLMVGLHTCGDLAPSTLRIFTSKAEVKAVCSVGCCYHLLSEEFENQHKD
RCANENWGFPMCHYLKEERWCCGRNARMSACLALQRVAVGQGLPTESLFYRAVLQNIIKDYYGISKCEQH
VGKIYSKCSSFLEYVRMSLKKLGLDESKVSEEIIMDYYENYKPRMNELEAFNMLKVVLAPCIETLILLDR
LCYLKEQDGVAWSALVKLFDPVQSPRCYAVIALKKQCDRG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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