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Report for CCDS36016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36016.1 Public Mus musculus 10 Tcp11l2 23 108 98 CCDS HistoryNCBI Gene:216198Re-query CCDS DB by CCDS ID:36016.1Re-query CCDS DB by GeneID:216198See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020223.7 ENSMUSP00000020223.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020223.7Link to Ensembl Protein Viewer:ENSMUSP00000020223.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020223Re-query CCDS DB by Protein ID:ENSMUSP00000020223
Original member Current member NCBI NM_146008.2 NP_666120.1 Accepted alive Link to Nucleotide Sequence:NM_146008.2Link to Protein Sequence:NP_666120.1Re-query CCDS DB by Nucleotide ID:NM_146008Re-query CCDS DB by Protein ID:NP_666120Link to BLAST:NP_666120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666120.1 517 Q8K1H7 517 100% 0 0

Chromosomal Locations for CCDS 36016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84584899 84585055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84587104 84587239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84589884 84590004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84591088 84591308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84594648 84594784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84604507 84604688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84604886 84605067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84608465 84608637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84613482 84613726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCCTTTCAACGGTGAGAAGCAATGTGTGAGCGAGGACCAGCAGAGTGACTCAGAGTCTTCTCGGTTCG
CCGAAGGCGTGGCTTCACTCAGTGACTATGAGTGTTCCAGGCAGAGCTTCACCAGCGATTCCTCCAGCAA
ATCCAGCTCTCCTGCCTCAACAAGCCCTCCCCGGGGCTTAATGTTTGATGATGTGATGGCTGCAGCAAAG
AACTTATCAGACATGACTCTCGCTCATGAAATAGCTGTGAATGAGAACTTCCAGCTGAAGCAAAATGCTC
TCCCCGAGAACAGCCTTGCTGGTCAAGTGAAGCGTGTTGTCCACCAGGCCTTCTGGGATGTCTTGGAAGC
AGATCTCAGTGCTGAGCCTCCTCAGTATGAATATGCCATCAAACTGTTTGAAGAAATCAGAGAGATTCTT
CTCTCTTTCCTCACGCCTGGCGGGAACAGACTTCACAGCCAGATCTGTGAGGTTCTGGACATCGACCTCA
TTAGACAGCAGGCCGAGCACAGTGCTGTCGACATCCAAGGTCTGGCCAACTATGTCATCACCACCATGGG
GAAGATATGTGCTCCTGTGAGAGATGAAGACATCCGAGAGCTGAAAGCTACCACCAACATCGTGGAGATG
CTGAGACAAATCTTCCGTGTCTTGGACCTCATGAGAATGGACATGATGAATTTTGTCATTAGGAATATTA
GACCTCACATCCAGCATCATTTGGTGGAATATGAGAGAAACAAATTCCAGGAAGTTGTAGAAGAAACTCC
AAATGCCCTCAGTCAAACCACAGAGTGGCTGAAAGAGTCCATAGATAAAGAATTGCTTTCTGAGACTGAT
GTAGCTCCTGCAGCTGAACATAGCTCCACGCCTAGCCTGAGCCCTCTGTTGGTGCTTAATAACTGTTACT
TGAAACTCCTTCAGTGGGATTATCAGAAAAAAGTCTTACCAGAGACACTCATGACAGATGGACCACGGCT
TCAAGAACTGTCAGAAAAGCTCAATCAATTGAAAATGACTGCCTGCGTGGCCTTAATCACCAACAACATG
GTGGGTGCTGTTACAGAAGGCCTGCCTGAACTTGCTAACAGGTTAAAAAGGATTTCAGCTGTTCTGCTTG
AAGGCATGAATAAAGAGACCTTTAACTTGAAGGAAGCCCTGCATTCTATTGGTGTTCAGACTTGTGCTGA
AGTTAACAAGGCCCTGGAAGAGAGAGGCTCGCCCACTTTAAATGCTGAGGTTCAAGCTAACCTTGTCGGT
CAGCTCTCCAGCCTTGAAGAGAAGGACAATCCTGTCTGCACCTTGATGGATAAACGGATCCAGTTGTACA
TGAAAGGCCTGCTCTGTCTTCCAAGCACTCAGAAGAGCATGCCTCCTGTGCCAGGTGGCCTTGATGTCAT
CCAGCGGGAGCTGGAAGTGCTTGGCTGCCAGTATGCAAACATTGTGAATCTCAACAAACAGGTGTATGGA
CCATTTTATGCAAATATATTCCGAAAGCTGCTCTTCCGGGATGAAGCCGTGGGGAAGATAGATGCTTCAC
TTCCCACTAACTAA

Translation (517 aa):
MPFNGEKQCVSEDQQSDSESSRFAEGVASLSDYECSRQSFTSDSSSKSSSPASTSPPRGLMFDDVMAAAK
NLSDMTLAHEIAVNENFQLKQNALPENSLAGQVKRVVHQAFWDVLEADLSAEPPQYEYAIKLFEEIREIL
LSFLTPGGNRLHSQICEVLDIDLIRQQAEHSAVDIQGLANYVITTMGKICAPVRDEDIRELKATTNIVEM
LRQIFRVLDLMRMDMMNFVIRNIRPHIQHHLVEYERNKFQEVVEETPNALSQTTEWLKESIDKELLSETD
VAPAAEHSSTPSLSPLLVLNNCYLKLLQWDYQKKVLPETLMTDGPRLQELSEKLNQLKMTACVALITNNM
VGAVTEGLPELANRLKRISAVLLEGMNKETFNLKEALHSIGVQTCAEVNKALEERGSPTLNAEVQANLVG
QLSSLEEKDNPVCTLMDKRIQLYMKGLLCLPSTQKSMPPVPGGLDVIQRELEVLGCQYANIVNLNKQVYG
PFYANIFRKLLFRDEAVGKIDASLPTN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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