NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35969.1 Public Mus musculus 10 Ptbp1 23 108 98 CCDS HistoryNCBI Gene:19205Re-query CCDS DB by CCDS ID:35969.1Re-query CCDS DB by GeneID:19205See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172282.7 ENSMUSP00000126192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172282.7Link to Ensembl Protein Viewer:ENSMUSP00000126192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172282Re-query CCDS DB by Protein ID:ENSMUSP00000126192
Original member NCBI NM_001077363.2 NP_001070831.1 Updated not alive Link to Nucleotide Sequence:NM_001077363.2Link to Protein Sequence:NP_001070831.1Re-query CCDS DB by Nucleotide ID:NM_001077363Re-query CCDS DB by Protein ID:NP_001070831
Current member NCBI NM_001077363.3 NP_001070831.1 Accepted alive Link to Nucleotide Sequence:NM_001077363.3Link to Protein Sequence:NP_001070831.1Re-query CCDS DB by Nucleotide ID:NM_001077363Re-query CCDS DB by Protein ID:NP_001070831Link to BLAST:NP_001070831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070831.1 555 P17225-1 555 100% 0 0

Chromosomal Locations for CCDS 35969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79854714 79854721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79856504 79856534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79858752 79858824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79858952 79859271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859352 79859522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859602 79859712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79859781 79859955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79860117 79860194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79860824 79860969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862014 79862047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862449 79862541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862653 79862869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862978 79863055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79863145 79863277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTG
TCAGCAACGGCCCCTTCATCATGAGCAGCTCTGCCTCAGCAGCCAATGGAAACGATAGCAAGAAGTTCAA
AGGTGACAACAGGAGCGCAGGAGTCCCTTCCAGAGTCATCCATGTCAGAAAGCTGCCCAGCGATGTCACT
GAGGGCGAGGTCATCTCCCTAGGGCTGCCCTTTGGAAAGGTTACCAACCTTCTCATGCTGAAGGGGAAGA
ACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAACACTATGGTTAACTACTATACATCGGTGGC
GCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAGAGCTCAAGACCGACAGCTCG
CCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCAGTCTGGAAACCTGGCCTTGG
CAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGCCCAGTGCTCAGGATCATTGT
GGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCTCTAAGTTTGGCACCGTCCTG
AAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCC
AGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTC
CAAGCTCACCAGTCTCAATGTCAAGTACAACAATGATAAGAGCAGAGACTACACTCGACCTGACCTGCCC
TCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAGCAGCCTTTGGTGCGCCCGGCATAATGTCAG
CCTCTCCGTATGCAGGAGCCGGGTTCCCTCCCACCTTTGCCATCCCTCAGGCCGCAGGCCTCTCTGTCCC
TAATGTCCATGGAGCCTTGGCCCCCCTGGCCATCCCGTCTGCTGCTGCTGCTGCTGCGGCCAGCCGCATT
GCCATCCCAGGGTTGGCAGGTGCTGGGAATTCTGTCCTTTTGGTCAGCAATCTGAACCCTGAGAGAGTCA
CACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAATAA
GAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGG
CACAAGCTGCACGGGAAGTCAGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGCTGCCTCGGGAGG
GTCAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCCCCGCTGCACCGCTTCAAGAAACCAGGCTC
CAAGAACTTCCAGAACATCTTTCCACCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCA
GAGGACGACCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGG
ACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGATTGAACTGCACAA
CCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG

Translation (555 aa):
MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVT
EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS
PNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVL
KIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP
SGDSQPSLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRI
AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNG
HKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS
EDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH