NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35853.1 Public Mus musculus 10 Nhsl1 23 108 98 CCDS HistoryNCBI Gene:215819Re-query CCDS DB by CCDS ID:35853.1Re-query CCDS DB by GeneID:215819See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037341.13 ENSMUSP00000040799.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037341.13Link to Ensembl Protein Viewer:ENSMUSP00000040799.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037341Re-query CCDS DB by Protein ID:ENSMUSP00000040799
Original member NCBI NM_173390.3 NP_775566.3 Updated not alive Link to Nucleotide Sequence:NM_173390.3Link to Protein Sequence:NP_775566.3Re-query CCDS DB by Nucleotide ID:NM_173390Re-query CCDS DB by Protein ID:NP_775566
Current member NCBI NM_173390.4 NP_775566.3 Accepted alive Link to Nucleotide Sequence:NM_173390.4Link to Protein Sequence:NP_775566.3Re-query CCDS DB by Nucleotide ID:NM_173390Re-query CCDS DB by Protein ID:NP_775566Link to BLAST:NP_775566.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775566.3 1587 Q8CAF4-1 1587 100% 0 0

Chromosomal Locations for CCDS 35853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18408313 18408514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18472919 18473071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18498033 18498157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18511550 18511742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18523791 18527042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18527536 18527668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18531268 18531973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4764 nt):
ATGAAAAAGGACGGCTCCTCAGGTTCCTTCGGAATCAAGGCAAGCCCAGGCTCCCTCTCACGTGCTGTGA
GTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGT
TTGTGGGCACCAGGTGGAAGCCGATGATGAGAACTGGATATACAGGACCCAGCCCAGAAAAGCGGTTTCC
AACTTGGACGAGGAGAGTCGATGGACTGTCCACTACACGGCACCATGGCATCAGCAAGAGAATGTGTTCC
TTCCCGCCACAAGACCCCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCT
GAGGGAATGTGACAAGCTGAGGCAAGATGGCTGCCGAAGTTCTCAGTACTATTCTCAGGGACCCACCTTT
GCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAAGCAGACCGAAAGTGCTCTCTCT
CTTCATCTGAAGAAGAAAGATTTATCGGAATCAGGAGACCTAAAACGCCAACCTCAGGTGACTTCTCCGA
CCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAA
GCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGCATCAGCCACTGGCCAAGATGATGATG
GTAGTGCCCATTCGCTGTACGTCCCAGACCACTACTCTACGTTAGGAAGGCTTGATAGTTATCGGTCCAC
CGGGCAATGCTTGGAAACCAGGGACACCAGCTGTCAGACCGAAGACGTGAAGGTCATCCCACCATCAATG
AGAAGGATCAGGGCTCACAAGGGGGTAGGCGTTGCTGCCCAGATGAGCCACCTCTCAGGTTCCTCAGGCA
ACATGTCTGTGCTGAGTGACTCAGCCGGTGTTGTGTTCCCATCTCGCCTCAGTAACGATACTGGTTTCCA
CAGTCTTCCACGTACCGGCCCGAGAGCAAGCACCTATTCACTGGAGGGAAGGATGGGTGCCCTGGGCTCT
ACTGAAGATACGGATGACACTTCTCCCTACCAGGGGGGTAGCTTACAGGGGCATGAAAACTTTGCGCATT
TAGGAGGTGCGTCGAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCC
AGCATGTGTGGTTTCACCTCATGCAGCCTACTCTACCAGTGTCATCCCAAATGCCACGCTACTGTCCTCT
TCAGAGGTTATTGTCATTCACACTGCTCAGAGTGCAGGACAGCTGGACAGTAGAACACCCGGTTCATCTT
CATATTCAAAAATAAAACCCAGAGACCGTCCCACACCCAGATGTTCTGTGAAAGATGACCATCAGTCCCC
CCGTCATCACTGGAACGAGGGTCATCTCATTCATTCACGGGCTTTAGCCTCCTCTGTCCCTGGTGCCACC
ACGCTGTTATCCCTCCATGATTCAGAGGTCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGATCCCAAG
CCATACTCTATCATTGTAGAAACAACCCAAGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAGAGCGA
GTGTAGTTATTCGGGGGACAGGGGATGTGGCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGG
CGGGCATCCCCACTGAAGCCACACCTGGCCACTCCTGGTTGCTCTACTCCCACAAGTAACGTGAGCAGCT
GCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATGATGGTTACTA
TACTACCACTCACGAGGCTGGGAACCTGTACACTCTCAGTGATGGCTTGGGGAACCCCAGGCACAGCATG
GTCAATGTTTTTGATGGAAGGGCTCAGAGAAGCCAAGGGGATCAGGCCGCTCACCAGGATAAAATCCTTT
CGAGAAACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAG
GATTCCCAAAAAGAACAACCAGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCAT
TCACTGCAGCTAAGCCTCCCTGGCAAGGGCGGCAGCTCCCCTTCCCAGAGCCCCTGCAGTGACTTTGAGG
AACCCTGGCTCCCCAGGTCCAGAAGCCAGAGCATTGTTAGCGAGGGTAGTAGCTTGACCTCCACCACCAC
TCCCAACGTGTATTCTCTGTGTGGGGTCACTCCGTCCCAGAGCGACACAAGTAGCGTCAAGTCGGAATAC
ACGGACCCTTGGGGTTACTACATTGACTACACGAGCTTGCAGGAAGATCCAGGGAACCCCACCGGGGGCT
GCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCC
AGTGCCCCAAGTGCCGGGCTGCTCAGTTAGACCAAAGATCGCCTCACCAGAGAAGTCACAGAGAGTCACC
TCTCCATCCAGTGGGTATTCTAGCCAGTCGAATACACCCACAGCACTCACCCCTGTGCCTGTGTTTTTAA
AATCAATGTCACCAGCAAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCTCTGAT
CTCTTCTATGTCCATCTCATCATCGTCCACTTCTCTCTCTTCTAATACTTCTACCGAAGGAAGTGGGACC
ATGAAGAAACTGGATACAACCCTGGCCTCGGCCCTTGCCCCTCCCCCTCCTCCTCTTCCCCCTCTGCCTT
CTCCGTGTCTGGCAGACAAGTCCCCTTTTCTTCCACCACCTCCTCCTCTAGCAGATTGCTCCGAGGGCTC
TCCTCTGCCGCCCTCTCCCATGTTCCCCCCTCCACCACCAGAAGCCCTTGTTCCCTTCTGCTCCCCCACC
GACGGGTGCCTTTCTCCTTCTCCCACAGCAGTTAGCCCCTCTCTTCCAAGATCCTTGCCTCCTGTGCCAG
CACCTCCACCTTTCTTGCCCTCATCAGAACCCCCGCCCGCTCCGCCTCTGGACCCCAAACTCATGAAAGA
AAACAGGCCCTTTTTCAAAAACTCTAGCCAGTCCGAATCCTCTAGGGAGGCCCTCAGGCGGCCTGCCAAC
AAGGAGGAGGGCTGCCGACCCCCCATGCCCCTGATCACCACAGAAGCTTTGCAGATGGTGCAGTTGAGGC
CAGTGAGGAAGAACTCAGGTGCCGGGGCAGTCCTGTTTTCTGAACCATCAGCTCAGGAACAACGAACTCC
GACTGCTCCACAGTATCACTTAAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCATAAATGAAATGGAG
AGTGAAAGCCAGGCTGCCTCTGTGACGAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACC
ATGACAGTGCAGTAGAGCGTGGCGGCCTTCCGAGCTGCAGCGATGGAGCTCCAGGCCCGGGTCCCAGCCT
CAGGACCACTCTGCTCCCAGACTCTTCACCCAGCAGGAAGCCACCCCCCATCTCTAAGAAGCCCAAACTG
TTCCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAGAGAACGGGAGCGAAGCTTTCC
CAGGCGTGCCCAGCCCTACCAGGGCAGAGGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGCCCAGC
ATCCCGAGCTGGCTCTCATGCTACGGCCCCCACCCCCGGCAGTCCGGCTCTAGAACCGGGAACTGCAGGG
TCCTTATCCTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCCCACAC
AGGAAGAGTCAGGCGAGAACAGTGTGGATGGTGAGAGAAATGCGAAGAGCTGCCTGTCTCAACAGGGCAG
AGAAGCTGGCTTGCTGGAACCCAACACAGCTGCTTCCTCTTCAGACCCCGTGGATGTATCTAAGGAAGAG
GGAAGCGATGAGGTGCTGACTCCGACTAAACCCAGGACAACAGAAGACCTGTTTGCAGCCATTCACAGAT
CTAAAAGGAAAGTCCTTGGCCGGAAAGACTCAGAAGACGATCACACTCGAAATCACTCTCCCTCCCCGCC
TGTGACACCCACGAGTGCTGCCCCTAACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCAGAGAAGCATA
AAAAAGAGCACTACCAGCAGTGACAACTTCAAAGCTCTGCTGCTAAAGAAGGGGAGTCGCTCGGACACCA
GCGCTCGCATGTCAGCGGCTGAGATGCTCAAGTCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCC
TTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGG
GCCAAGAACGAAGGCCTGATGCCTCGGAGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGC
CACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTC
CGAGGGAGAGGGAGAACCTGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCTGGATGCTACCAGGGTG
TGCTCTCTGGACAGACTGACGGGTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCGAGGAGCCTGCCT
CTGTGGATGGGATAGGAAGGGCTGAGGGCAACGGTCCCTCGGAGCAGTGTGGGGGTACGGAACAGAAGAG
TTAG

Translation (1587 aa):
MKKDGSSGSFGIKASPGSLSRAVSWINFSSLSRQTKRLFRSDGELSVCGHQVEADDENWIYRTQPRKAVS
NLDEESRWTVHYTAPWHQQENVFLPATRPPCVEDLHRQAKLNLKSVLRECDKLRQDGCRSSQYYSQGPTF
AAGSSPCDDYQDEDTEADRKCSLSSSEEERFIGIRRPKTPTSGDFSDLHTQTNWTKSLPLPTPEEKTRQQ
AQTVQADVVPINITASATGQDDDGSAHSLYVPDHYSTLGRLDSYRSTGQCLETRDTSCQTEDVKVIPPSM
RRIRAHKGVGVAAQMSHLSGSSGNMSVLSDSAGVVFPSRLSNDTGFHSLPRTGPRASTYSLEGRMGALGS
TEDTDDTSPYQGGSLQGHENFAHLGGASSTGMLSRPKSQQLRFLESPACVVSPHAAYSTSVIPNATLLSS
SEVIVIHTAQSAGQLDSRTPGSSSYSKIKPRDRPTPRCSVKDDHQSPRHHWNEGHLIHSRALASSVPGAT
TLLSLHDSEVSLNAPANRENGSQAILYHCRNNPSFPDHPSDVDGKSECSYSGDRGCGSSEPWEYKTSSNG
RASPLKPHLATPGCSTPTSNVSSCSLDQTSLKGDTRSLCSEDHDGYYTTTHEAGNLYTLSDGLGNPRHSM
VNVFDGRAQRSQGDQAAHQDKILSRNISLKKAKKPPLPPSRTDSLRRIPKKNNQTNGQVLNESLIASLQH
SLQLSLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSLTSTTTPNVYSLCGVTPSQSDTSSVKSEY
TDPWGYYIDYTSLQEDPGNPTGGCSANTEAATGNGPVRHIQEGSRVPVPQVPGCSVRPKIASPEKSQRVT
SPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSMSISSSSTSLSSNTSTEGSGT
MKKLDTTLASALAPPPPPLPPLPSPCLADKSPFLPPPPPLADCSEGSPLPPSPMFPPPPPEALVPFCSPT
DGCLSPSPTAVSPSLPRSLPPVPAPPPFLPSSEPPPAPPLDPKLMKENRPFFKNSSQSESSREALRRPAN
KEEGCRPPMPLITTEALQMVQLRPVRKNSGAGAVLFSEPSAQEQRTPTAPQYHLKPSAFLKSRNSINEME
SESQAASVTSSLPMPAKSQSQGDHDSAVERGGLPSCSDGAPGPGPSLRTTLLPDSSPSRKPPPISKKPKL
FLVVPPPQRDFTAEPTENGSEAFPGVPSPTRAEGEAVRSQEEKSSPASRAGSHATAPTPGSPALEPGTAG
SLSSSIVEANVPMVQPNTSPGPTQEESGENSVDGERNAKSCLSQQGREAGLLEPNTAASSSDPVDVSKEE
GSDEVLTPTKPRTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTSAAPNLASPKQVGSIQRSI
KKSTTSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSADSPDSPSSCSPNKNRRAQEEW
AKNEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKARRALDATRV
CSLDRLTGQEMDQASLLCSEEPASVDGIGRAEGNGPSEQCGGTEQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH