NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35821.1 Public Mus musculus 1 Smyd2 23 108 98 CCDS HistoryNCBI Gene:226830Re-query CCDS DB by CCDS ID:35821.1Re-query CCDS DB by GeneID:226830See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027897.7 ENSMUSP00000027897.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027897.7Link to Ensembl Protein Viewer:ENSMUSP00000027897.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027897Re-query CCDS DB by Protein ID:ENSMUSP00000027897
Original member Current member NCBI NM_026796.2 NP_081072.1 Accepted alive Link to Nucleotide Sequence:NM_026796.2Link to Protein Sequence:NP_081072.1Re-query CCDS DB by Nucleotide ID:NM_026796Re-query CCDS DB by Protein ID:NP_081072Link to BLAST:NP_081072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081072.1 433 Q8R5A0 433 100% 0 0

Chromosomal Locations for CCDS 35821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 189880786 189880866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189882109 189882217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189883824 189883998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189885299 189885419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189886521 189886631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189888815 189888917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189891400 189891467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189896571 189896695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189897423 189897483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189899818 189899928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189909851 189909914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189922107 189922279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCGCGCCGAGGCCCGCGGCGGCCTGGAGCGCTTCTGCAGTGCGGGCAAGGGCCGGGGGCTCCGCGCGC
TGCGGCCCTTCCACGTGGGCGACCTCCTCTTCTCCTGCCCGGCCTACGCCTGCGTGCTCACCGTGGGCGA
GCGGGGCCACCACTGCGAGTGCTGCTTCGCCAGGAAAGAAGGATTGTCAAAATGTGGACGGTGCAAGCAG
GCGTTCTACTGCGACGTGGAATGTCAGAAGGAAGACTGGCCCCTGCACAAGCTGGAATGCTCCTCCATGG
TTGTTTTGGGGGAGAACTGGAATCCTTCGGAGACTGTGCGGCTCACAGCAAGAATTCTGGCCAAACAGAA
AATCCACCCAGAGAGGACACCTTCAGAGAAATTGTTGGCTGTGAGGGAGTTTGAGTCACATCTGGACAAG
CTAGACAACGAGAAGAAAGATCTCATCCAGAGTGACATCGCCGCTCTCCACCAGTTCTACTCCAAGTACC
TGGAATTCCCTGACCACAGCAGTCTCGTGGTGCTCTTCGCCCAGGTGAACTGTAATGGCTTCACTATTGA
AGATGAAGAGCTCTCCCATTTGGGATCGGCGATATTCCCTGATGTTGCATTGATGAATCACAGCTGCTGC
CCGAATGTCATTGTGACCTACAAAGGGACCCTGGCAGAAGTCAGAGCTGTACAGGAGATCCACCCAGGAG
ACGAGGTGTTCACCAGCTACATCGACCTGCTATATCCAACAGAAGACAGGAACGACCGGCTAAGAGACTC
CTATTTCTTTACCTGTGAGTGCCGGGAGTGTACAACCAAGGATAAGGACAAAGCCAAGGTGGAAGTCCGA
AAGCTCAGCAGCCCGCCACAGGCAGAAGCCATCCGAGACATGGTCAGATACGCACGCAATGTCATCGAGG
AGTTCCGGAGGGCCAAACACTACAAATCCCCTAGTGAGCTGCTGGAGATCTGCGAGCTTAGCCAGGAGAA
GATGAGCTCCGTGTTTGAGGACAGCAATGTGTACATGCTGCACATGATGTACCAGGCCATGGGCGTCTGC
CTGTACATGCAGGACTGGGAGGGAGCCCTGAAATACGGGCAGAAGATCATTAAGCCGTACAGTAAGCACT
ACCCCGTGTACTCCCTCAACGTGGCTTCCATGTGGCTGAAGCTGGGAAGACTGTACATGGGTCTGGAAAA
CAAAGCGGCCGGCGAGAAGGCCCTGAAGAAGGCCATTGCCATCATGGAGGTAGCTCACGGCAAGGACCAT
CCGTACATCTCTGAAATCAAGCAGGAGATTGAGAGCCACTGA

Translation (433 aa):
MRAEARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQ
AFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDK
LDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCC
PNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVR
KLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC
LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH
PYISEIKQEIESH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH