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Report for CCDS35798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35798.1 Public Mus musculus 1 Sdccag8 23 108 98 CCDS HistoryNCBI Gene:76816Re-query CCDS DB by CCDS ID:35798.1Re-query CCDS DB by GeneID:76816See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027785.14 ENSMUSP00000027785.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027785.14Link to Ensembl Protein Viewer:ENSMUSP00000027785.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027785Re-query CCDS DB by Protein ID:ENSMUSP00000027785
Original member Current member NCBI NM_029756.3 NP_084032.1 Accepted alive Link to Nucleotide Sequence:NM_029756.3Link to Protein Sequence:NP_084032.1Re-query CCDS DB by Nucleotide ID:NM_029756Re-query CCDS DB by Protein ID:NP_084032Link to BLAST:NP_084032.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084032.1 717 Q80UF4 717 100% 0 0

Chromosomal Locations for CCDS 35798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 176814989 176815055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176824752 176824904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176826199 176826284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176828870 176828983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176831057 176831182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176840285 176840425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176844824 176844888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176845181 176845369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176853764 176853902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176868212 176868364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176874564 176874698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176877990 176878106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176919544 176919686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176946108 176946235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176948281 176948389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 176955792 176955923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177011889 177012015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177020115 177020144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGCGAAGTCCCCAGGGAACTCTACCCTGGAGGACAGTCTGGGGCAATACCAACGGAGTCTCCGGGAAC
GTGCCAATAGAAGCATTCACCAGTTGAAATGTGCCCTGAGAGAAGTGGATGTCACTGTAGAAGAAGATGC
ACTGGATCCTTCCACCAGCATCAACGTAGAAAATGAGGACACAGGGGTGGCCTGGCATGAGCTGCAGCAC
AGCCATGCTGTCAATCAACTGAAAGCTTTGTTGCGTCAACAAACAAATAAGGAAAATGAGACATCTCCAC
CGCGAAGACGAAAGTTGTCCCCTTCGCGGCCGTCAGAATGTGACGATGGCAGCATGCCCACCATGCACAA
CCTCGTTCCTATCATTAACGACCAGTCTCAATATATCCACCACTTAGAAGCAGAAGTCAAGTTCTGCAAG
GATGAATTGTCTGGAATGAAAAATAGGGTGCAAGTAGTTGTACTTGAGAATGAAAGGCTCCAGCAAGAAC
TGAAATCTCAAAGACCGGAGGAGACATTGAGGGAGCAAACATTCCTGGATGCATCTGGAAACATGCAGAA
TTCTTGGATTATGACACGAGAAGATTCTAGGGTGGATGAAGCTGCAAAGAGACCATTTTCTCATGGTGAT
GCTGAAACTGGCAAAACTGCATCCACTGGTGATGCCAATAAATGGAAGCTGGAGCTGGAGAGGCTGAAAC
TCACATACGAGGCGAAGACTGACCTTCTGGAATCTCAGCTGATGCTTCTGAGGAAAGACTTAGCTGAATA
CCAGAAAACCTGTGAGGATCTTAAGGAAAGATTGAAGCATAAAGAGTCTCTTCTGGCTGCGAGTGCATCC
AGCCGTGTGGGTGGCCTCTGTTTGAAATGTGCTCAGCATGAAGCTGTTCTTTCCCAGACACACAGCAACG
TGCACATCCAGACCATCGAGAGGCTGACTAAAGAGAGAGATGACTTAATGTCTGTGCTAGTCTCTGTGCG
GAGCAGCTTGGCAGAAGCGCAGAAGAGAGAGACAAGTGCCTATGAGCAGGTGAAGCATGCTGTGCAGATG
ACAGAGGAAGCCAACTTTGAGAAGACCAAGGCTTTGATCCAGTGTGAGCAGCTGAAGAGTGAGCTGGAGA
GGCAGACAGAAAGACTGGAAAAGGAGCTTGCCTCTCAGCAAGAAAAGAGGGCTGTGGAGAAGGAGATGAT
AAAGAAAGAAGTAGCCAGAGAGAGGGAAGATGCAGAGTCAAAGATGTTGATCCTGTCTCAGAATATTGCC
AAGCTGGAGGCCCAGGTTGAAAAGGTCACCAGGGAGAAGACTGCAGCTGTCAGTCACTTAGAGGAAATTC
AGAACCACGTTGCGTCTCAGGAAATGGACGTCACAAAGGTGTGTGGAGAAATGCGCTTTCAGTTGAATAA
AACCAAAATGGAGAAGGATGAGGTGGAAAAGGAACACAGAGAATACAAAGCAAAGTCTCACAAGGATCTT
GAAATGAAAGTCCAGGAAATAGAGAAGTTGAGACTAGAACTGAGCGAAAGCGAGCAGCATGTGGAACAGG
AGCAGCAGAAGGCAGCTCGGGCCAGACAGGAGTGCCTGCGAGTCACAGAGCTGCTGGGCGAGGCCGAGCG
CCAACTGCACCTCACCAGACTGGAAAAAGATAGCATTCAGCAAAGCTTTAGCAATGAAGCAAAGGCCCAA
GCCCTTCAGGCCCAGCAGAGAGAACAGGAGCTGACACAGAAGATACAGCAAATGGAGACCCAGCACGACA
AAACTGAAAGTGAACAGTATTTACTGCTGACATCCCAGAACACATTTCTGACAAAATTAAAAGAAGAATG
CTGCTTGTTAGCCAAGAAACTGGAAAAGGTCTCACTAAAGAGCAGATCGCAAATAGTTCGACTTAGTCAA
GAGAAGAGATACTTGTGTGACAAGCTAGAGAAGTTACAGAAGAGAAATGACGAACTAGAAGAGCAATGCA
TCCAACATGGGAGGGTGCATGAGACCATGAAGGAAAGACTCAGGCAGCTGGATAAGCACGGCCAGGCTAC
AGCGCAGCAGCTGGTGCAGTTGCTTAACAAGCAGAATCAGCTTCTCCTGGAGCGACAGAACCTGTCTGAG
GAAGTGGCCCGGCTGCGAGCGCAGTTACCCAGCATGCCACAATCTGATTGCTGA

Translation (717 aa):
MAKSPGNSTLEDSLGQYQRSLRERANRSIHQLKCALREVDVTVEEDALDPSTSINVENEDTGVAWHELQH
SHAVNQLKALLRQQTNKENETSPPRRRKLSPSRPSECDDGSMPTMHNLVPIINDQSQYIHHLEAEVKFCK
DELSGMKNRVQVVVLENERLQQELKSQRPEETLREQTFLDASGNMQNSWIMTREDSRVDEAAKRPFSHGD
AETGKTASTGDANKWKLELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAASAS
SRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQM
TEEANFEKTKALIQCEQLKSELERQTERLEKELASQQEKRAVEKEMIKKEVAREREDAESKMLILSQNIA
KLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAKSHKDL
EMKVQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNEAKAQ
ALQAQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQ
EKRYLCDKLEKLQKRNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSE
EVARLRAQLPSMPQSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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