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Report for CCDS35796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35796.1 Public Mus musculus 1 Chml 23 108 98 CCDS HistoryNCBI Gene:12663Re-query CCDS DB by CCDS ID:35796.1Re-query CCDS DB by GeneID:12663See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104984.3 ENSMUSP00000100600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104984.3Link to Ensembl Protein Viewer:ENSMUSP00000100600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104984Re-query CCDS DB by Protein ID:ENSMUSP00000100600
Original member Current member EBI ENSMUST00000211207.1 ENSMUSP00000147889.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211207.1Link to Ensembl Protein Viewer:ENSMUSP00000147889.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211207Re-query CCDS DB by Protein ID:ENSMUSP00000147889
Original member NCBI NM_021350.2 NP_067325.2 Updated not alive Link to Nucleotide Sequence:NM_021350.2Link to Protein Sequence:NP_067325.2Re-query CCDS DB by Nucleotide ID:NM_021350Re-query CCDS DB by Protein ID:NP_067325
Current member NCBI NM_021350.3 NP_067325.2 Accepted alive Link to Nucleotide Sequence:NM_021350.3Link to Protein Sequence:NP_067325.2Re-query CCDS DB by Nucleotide ID:NM_021350Re-query CCDS DB by Protein ID:NP_067325Link to BLAST:NP_067325.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067325.2 621 Q9QZD5 621 99.839% 0 1

Chromosomal Locations for CCDS 35796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175686488 175688353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGCGGAGAAGCTTCCCACAGAGTTTGATGTGGTAATAATAGGGACAGGCTTGCCGGAGTCCATCCTGG
CAGCTGCATGTTCAAGAAGTGGACAGAGAGTTCTGCATGTTGACTCAAGGAGTTACTATGGAGGGAATTG
GGCGAGTTTCAGCTTTACAGGTTTGCAGTCCTGGCTGAAGGACTATCAACAGAACCATGACAGCGAGGAA
GGCGTGACCGCCACATGGCAAGACCTGATCCATGAAACAGAAGAAGCCATCTCTCTTCGCAAGAAGGATG
AAACTATTCAGCACACAGAAGTCTTCTGTTATGCTAGTCAAGATGTGGAGGACAGCGTGCAAGACACCGA
GACTCTGCAGAGAAGTTCCCCCCTAGAGGCATCTGCTACTCCGGCTGACTCTCTGGATTCTGCAAGCTTG
CCCAAAGAAAGGCAGTCAGCTTACTCTACAAGCTATGAAGTGCCTTCTAGACATACAGAGGAAAGTGATA
GAGAGCTTTCACTACCCTCAGCTAATGTGGAGGACTCACTGGAGAAAGAAAAGTACTGTGGCGATAAGAC
GGATATGCACACAGTTTCAGGTGAAGATAAAGGTGAACACAAACTTGTTGTACAAGACAGCATTGAACAA
CCAAAGAGAAATAGGATTACTTACTCTCAAATGGTTAAGGAGAGCCGGAGATTTAATATTGACTTGGTAT
CAAAGCCGCTGTATTCTCAAGGGTCACTGATTGATCTTCTAATCAAATCAAATGTTAGTCGTTATGCAGA
ATTTAAGAATGTCACTAGGATCCTTGCATTTTGGGAAGGGAAGGTAGAACAGGTGCCTTGCTCCAGAGCA
GATGTCTTTAATAGTAAAGAGCTCAGTATGGTTGAAAAGAGAATGCTAATGAAGTTTCTTACATTCTGTT
TAGACTATGAACAACATTCTGATGAATACCAAGATTTCAAACAGTGTTCATTTTCTGACTACTTAAAAAC
TAAAAAACTAACACCTAATCTCCAGCACTTCATACTACACTCAATTGCAATGACATCAGAATCATCTTGC
ACTACATTAGATGGCCTTCAAGCAACAAAAACCTTTCTTCAGTGTCTTGGACGGTTTGGCAATACTCCCT
TTATATTTCCTTTATACGGCCACGGAGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTTGGTGG
AGTCTATTGTCTTCGCCATAAAGTACAATGCCTTGTAGTTGACAAAGACTCTGGAAGATGTAAAGGAATC
ATAGATGCCTTTGGTCAGAGAATAAGTGCCAACTACTTTATTGTGGAGGACAGTTATCTTCCTAAGGAAA
CATGTTCAAACGTGCAATATAAGCAGATCTCAAGGGCAGTGCTCATCACAGATCAGTCCATCCTGAAGAC
AGATTCGGACCAGCAGATTTCCATTTTGGTAGTGCCTCCTCTGGAGCCAGGAACCACTTCTGTTCGGGTC
ATGGAATTATGTTCGTCAACCATGACATGCATGAAGGACAGCTATCTGGTCCACCTGACCTGTTCCTCTT
CAAAAACAGCCAGAGAAGACTTGGAACCTGTGGTGAAGCAGTTATTCATTCCTGAAGCAGAAGCAGAAGC
AGGCAAAGATGAACTCCGAAAACCAAGACTCTTGTGGGCTCTTTATTTTAATATGAGAGATTCCTCAGGA
GTGAGCCGAAGCTCATACTGTGGCTTACCTTCCAATGTGTACATCTGCTCTGGGCCTGACTGGGGACTGG
GGAGTGAGCATGCAGTCAAGCAGGCGGAAACACTGTTCCAAGAGATTTTTCCCAGTGAAGAGTTCTGCCC
TCCTCCACCAAACCCTGAAGACATCATCTTTGAAGCTGAGGGTTAG

Translation (621 aa):
MAEKLPTEFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSWLKDYQQNHDSEE
GVTATWQDLIHETEEAISLRKKDETIQHTEVFCYASQDVEDSVQDTETLQRSSPLEASATPADSLDSASL
PKERQSAYSTSYEVPSRHTEESDRELSLPSANVEDSLEKEKYCGDKTDMHTVSGEDKGEHKLVVQDSIEQ
PKRNRITYSQMVKESRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRA
DVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSESSC
TTLDGLQATKTFLQCLGRFGNTPFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGI
IDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVLITDQSILKTDSDQQISILVVPPLEPGTTSVRV
MELCSSTMTCMKDSYLVHLTCSSSKTAREDLEPVVKQLFIPEAEAEAGKDELRKPRLLWALYFNMRDSSG
VSRSSYCGLPSNVYICSGPDWGLGSEHAVKQAETLFQEIFPSEEFCPPPPNPEDIIFEAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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