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Report for CCDS35764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35764.1 Public Mus musculus 1 Fam78b 23 108 98 CCDS HistoryNCBI Gene:226610Re-query CCDS DB by CCDS ID:35764.1Re-query CCDS DB by GeneID:226610See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 35764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156025.1 ENSMUSP00000117572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156025.1Link to Ensembl Protein Viewer:ENSMUSP00000117572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156025Re-query CCDS DB by Protein ID:ENSMUSP00000117572
Original member Current member EBI ENSMUST00000126198.2 ENSMUSP00000122636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126198.2Link to Ensembl Protein Viewer:ENSMUSP00000122636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126198Re-query CCDS DB by Protein ID:ENSMUSP00000122636
Original member Current member EBI ENSMUST00000165874.7 ENSMUSP00000131620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165874.7Link to Ensembl Protein Viewer:ENSMUSP00000131620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165874Re-query CCDS DB by Protein ID:ENSMUSP00000131620
Original member Current member EBI ENSMUST00000190081.6 ENSMUSP00000139628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190081.6Link to Ensembl Protein Viewer:ENSMUSP00000139628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190081Re-query CCDS DB by Protein ID:ENSMUSP00000139628
Original member Current member NCBI NM_001160261.1 NP_001153733.1 Accepted alive Link to Nucleotide Sequence:NM_001160261.1Link to Protein Sequence:NP_001153733.1Re-query CCDS DB by Nucleotide ID:NM_001160261Re-query CCDS DB by Protein ID:NP_001153733Link to BLAST:NP_001153733.1
Original member Current member NCBI NM_001160262.1 NP_001153734.1 Accepted alive Link to Nucleotide Sequence:NM_001160262.1Link to Protein Sequence:NP_001153734.1Re-query CCDS DB by Nucleotide ID:NM_001160262Re-query CCDS DB by Protein ID:NP_001153734Link to BLAST:NP_001153734.1
Original member Current member NCBI NM_175461.4 NP_780670.2 Accepted alive Link to Nucleotide Sequence:NM_175461.4Link to Protein Sequence:NP_780670.2Re-query CCDS DB by Nucleotide ID:NM_175461Re-query CCDS DB by Protein ID:NP_780670Link to BLAST:NP_780670.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153733.1 261 Q8BQN5 261 100% 0 0
NP_001153734.1 261 Q8BQN5 261 100% 0 0
NP_780670.2 261 Q8BQN5 261 100% 0 0

Chromosomal Locations for CCDS 35764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167001566 167001828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167078537 167079059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGGCTGTATCCAAAGCATCACCTGCAAGGCGCGGATCCGGCGCGAGAACATCGTGGTGTACGATGTGT
GCGCCACCATCGACCAGTGCCCCACGCGCATCGAGGAGACCTCGCCCATCGTCCTGCGCTACAAGACCCC
TTACTTCAAAGCCTCGGCCCGTGTGGTCATGCCCCCCATCCCCCGCCACGAGACCTGGGTGGTGGGCTGG
ATCCAGGCATGCAACCAGATGGAGTTCTTCAACACCTACAGCGACCTGGGCATGTCAAGCTGGGAACTGC
CTGACTTGAGGGAAGGGAGAGTAAAAGCCATCAGTGACTCAGACGGGGTGAGCTACCCATGGTACGGGAA
CACGACAGAGACTGTGACCCTGGTTGGCCCCACCAACAAGATCTCCAGGTTCTCCGTCAGCATGAATGAT
AACTTCTACCCCAGCGTGACATGGGCAGTGCCAGTGAGTGACAGCAATGTGCCACTGCTCACAAGGATCA
AGAGGGACCAAAGTTTTACCACATGGCTGGTGGCCATGAACACCACCACCAAGGAAAAGATCATACTGCA
GACCATCAAATGGAGGATGAGAGTGGACATTGAAGTGGACCCTCTTCAGCTGTTGGGGCAGCGGGCCCGG
CTAGTGGGCAGGACTCAGCAGGAGCAGCCCCGGATCCTGAGCCGGATGGAGCCCATCCCCCCTAACGCAC
TAGTGAAGCCCAATGCCAACGATGCCCAGGTCCTCATGTGGAGGCCCAAGCGGGGACCACCTCTGGTTGT
GATACCTCCTAAGTAA

Translation (261 aa):
MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPIPRHETWVVGW
IQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMND
NFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRAR
LVGRTQQEQPRILSRMEPIPPNALVKPNANDAQVLMWRPKRGPPLVVIPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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