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Report for CCDS35733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35733.1 Public Mus musculus 1 Odr4 23 108 98 CCDS HistoryNCBI Gene:226499Re-query CCDS DB by CCDS ID:35733.1Re-query CCDS DB by GeneID:226499See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097547.9 ENSMUSP00000095153.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097547.9Link to Ensembl Protein Viewer:ENSMUSP00000095153.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097547Re-query CCDS DB by Protein ID:ENSMUSP00000095153
Original member Current member NCBI NM_001077237.1 NP_001070705.1 Accepted alive Link to Nucleotide Sequence:NM_001077237.1Link to Protein Sequence:NP_001070705.1Re-query CCDS DB by Nucleotide ID:NM_001077237Re-query CCDS DB by Protein ID:NP_001070705Link to BLAST:NP_001070705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070705.1 415 Q4PJX1-3 415 100% 0 0

Chromosomal Locations for CCDS 35733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150362821 150362888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150363491 150363598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150372029 150372199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150374795 150374885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150375496 150375624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150380312 150380377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150382268 150382408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150383058 150383094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150384429 150384535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150386358 150386453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150388523 150388657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150390236 150390334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGGAAGAACCTACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAAGCATCAACCTCCAGGGAAAAC
CTTTTGTCTCTGGTCTTTTGATAGGACAGTGTTCTTCACAAAAGGATTATGTGATTCTTGCCACTAGAAC
ACCACCCAAAGAGGAACAAAATGACAAAGTCAAACAGCCGAGAGCTAAGTTGGATAATTTGGATGAAGAA
TGGGCCACAGAACATGCCAGCCAGGTGTCCAGAATGCTCCCTGGAGGACTTGTGGTTCTTGGAATATTTA
TTATCACAACTTTAGAACTAGCAGATGATTTTCAAAATGCCCTGCGCAGACTAATATTTTCTATGGAAAA
ATCTATGAGTAGAAAAAGACTATGGGATGTCACAGAGGACGAGGTCTCAGAACGAGTGACACTTCACATT
TGTTCTTCTACAAAAAAAATATCTTGTCGAACTTACGATGTCCAAGATCCAAAGAGTTCAGCAAGACCCG
CAGATTGGAAGTATCAGAGTAGAGTGTCTGCCTCATGGCTGTCTCTAGACTGTACTGTTCACGTTAACAT
TCACATCCCACTGTCGGCTACTTCTGTCAGTTACACTCTGGAAAAAAACACAAAGAAAAAAAGCAGAGGA
AATACGCAAGCAACTGCTCATTCTTTTGATGTCCGAGTGCTAACACAGTTGCTCCTGAATTCGGACCACA
GATCCACAGCCACAGTCCAAATCTGCAGTGGTTCTGTAAATCTTCGGGGAAATGTGAAATGCAGAGCTTA
TATCCATAGCAACAGACCCAAGGTTAAAGATGCTGTGCAGGCAGTGAAGAGAGATATTTTGAACACAGTT
GCTGATCGCTGTGAAATACTCTTTGAGGACCTGCTTCTGAATGAAATTCCAGAAAAAAAAAATTATGAAC
TTCCTCAGAGAGTTTTTGTTCCCCTTCCTGGATCTACTGTAATGTTATGTGACTATAAGTTTGGTGATGA
ATCAGCTGAAGAAATCAGAGACCATTTTTCAGAGATGTTAGATCATGAGATTCAAATAGAAGACTTGGAA
ATTGCAGAGGAAGTAAACACAGCTTGCATGACTTCCTCTGTGAATAGTGAGGCTTCACTGACCAACACAA
GTGAAGAACAACCAGAACAACCAAAAAAAACCATAGGAGTGAAAATTCAGCAAAACATAGGTGTGATCGC
AGCACTAGCTGTTGCAGTGCTTGCTGCGGGCATCTCCTTCCATTACTTCAGTGATTAG

Translation (415 aa):
MGRTYIVEETVGQYLSSINLQGKPFVSGLLIGQCSSQKDYVILATRTPPKEEQNDKVKQPRAKLDNLDEE
WATEHASQVSRMLPGGLVVLGIFIITTLELADDFQNALRRLIFSMEKSMSRKRLWDVTEDEVSERVTLHI
CSSTKKISCRTYDVQDPKSSARPADWKYQSRVSASWLSLDCTVHVNIHIPLSATSVSYTLEKNTKKKSRG
NTQATAHSFDVRVLTQLLLNSDHRSTATVQICSGSVNLRGNVKCRAYIHSNRPKVKDAVQAVKRDILNTV
ADRCEILFEDLLLNEIPEKKNYELPQRVFVPLPGSTVMLCDYKFGDESAEEIRDHFSEMLDHEIQIEDLE
IAEEVNTACMTSSVNSEASLTNTSEEQPEQPKKTIGVKIQQNIGVIAALAVAVLAAGISFHYFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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