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Report for CCDS35713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35713.1 Public Mus musculus 1 Mybph 23 108 98 CCDS HistoryNCBI Gene:53311Re-query CCDS DB by CCDS ID:35713.1Re-query CCDS DB by GeneID:53311See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038445.12 ENSMUSP00000042195.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038445.12Link to Ensembl Protein Viewer:ENSMUSP00000042195.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038445Re-query CCDS DB by Protein ID:ENSMUSP00000042195
Original member Current member EBI ENSMUST00000191577.1 ENSMUSP00000141104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191577.1Link to Ensembl Protein Viewer:ENSMUSP00000141104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191577Re-query CCDS DB by Protein ID:ENSMUSP00000141104
Original member Current member NCBI NM_001357515.1 NP_001344444.1 Accepted alive Link to Nucleotide Sequence:NM_001357515.1Link to Protein Sequence:NP_001344444.1Re-query CCDS DB by Nucleotide ID:NM_001357515Re-query CCDS DB by Protein ID:NP_001344444Link to BLAST:NP_001344444.1
Original member Current member NCBI NM_016749.2 NP_058029.2 Accepted alive Link to Nucleotide Sequence:NM_016749.2Link to Protein Sequence:NP_058029.2Re-query CCDS DB by Nucleotide ID:NM_016749Re-query CCDS DB by Protein ID:NP_058029Link to BLAST:NP_058029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344444.1 483 P70402 483 100% 0 0
NP_058029.2 483 P70402 483 100% 0 0

Chromosomal Locations for CCDS 35713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134193504 134193726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134193814 134193948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134194577 134194744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134196970 134197058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134197351 134197546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134197730 134197869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134198401 134198560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134199714 134199850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134199950 134200136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134200395 134200411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGACAGGAAAAGCCACCTCTGAGGCTTCTGTCTCTACTCCAGAGGAGACAGCACCTGAGCCTGCCAAGG
TGCCCACTACAGAGCCTTCTGGAGAGGTGGCAGCATCAGAGTCCACCGGGCAAGAGCAGGCTCCAGAGCC
ACAGAAGCCTCAGGCACAGGATCCTGCAGCTCCTGCAGCTTCTGCCATGCCCGCAGCCACTAAGCCTGAA
CCTCCGAGTGAAGATGTCCCCAGTGCCCCACTGCGGCTGACCTTGGAGGATGTGAGCCACAGCTCCTTGA
CTGTGAGCTGGGAGCCCCCCGAGAAGCTGGGCAAACTGGGGCTTCAAGGCTATGTGTTGGAGTTCTGTCG
AGAGGGAGCCTCAGAATGGGTGCCTGTGAATCCCCGGCCCGTGATGGTGACCCAGCAGACGGTTCGAAAC
CTGGCCCTGGGAGACAAGTTCTTCCTGCGTGTGACTGCAGTAAGCTCAGCAGGGGCAGGCCCTCCAGCCG
TTCTGGACCAGCCTGTCCACATCCAAGAGATCACTGAAGCCCCCAAGATCCGTGTTCCCCGACACCTTCG
TCAGACCTACATCCGCCAGGTGGGAGAGTCAGTCAACCTGCAAATCCCCTTCCAGGGGAAGCCCAAGCCA
CAGGTCTCTTGGACCCACAATGGCCACGCTCTGGACAACCAGAGAGTTAATGTGCGCAGCGGGGACCAGG
ACTCCATCCTCTTCATTCGCTCTGCTCAGCGCGCAGACTCAGGCCGCTATGAGCTCACCGTGCATCTGGA
AGGCTTGGAAGCCAAGGCCAGCATTGACATCCTGGTGATTGAGAAGCCCGGGCCCCCGAGCAGCATCAAG
CTACTGGATGTCTGGGGTTGCAATGCTGCCCTCGAGTGGACACCACCCCAGGACACAGGCAACACAGAGC
TCCTGGGCTACACAGTACAGAAGGCAGACAAAAGGACAGGGCAATGGTTCACAGTGTTGGAGCGCTATCA
CCCCACCACCTGCACCATCTCAGACCTCATCATTGGCAACTCGTACTCTTTTCGGGTCTTCTCAGAAAAC
CTGTGTGGCCTCAGTGACTTAGCCACCACCACCAAGGAGCTGGCTCACATCCACAAGGCAGATATTACTG
CCAAACCTAGAGAGTTTATTGAGCGAGACTTCTCAGAAGCGCCCTCGTTCACCCAGCCCCTGGCTGACCA
TACCTCCACTCCTGGCTATAGCACGCAGCTTTTCTGCAGCGTCCGAGCATCACCTAAGCCCAAGATCATC
TGGATGAAAAACAAGATGGACATCCAGGGTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCA
CCCTGGAGATCCGGAAGCCCAGCCCCTTTGATTCTGGGGTCTACACTTGCAAGGCCATCAACGTGCTAGG
GGAGGCCTCTGTGGATTGTCGGCTGGAGGTTAAAGCTTCTGCCACACACTAA

Translation (483 aa):
MTGKATSEASVSTPEETAPEPAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKPE
PPSEDVPSAPLRLTLEDVSHSSLTVSWEPPEKLGKLGLQGYVLEFCREGASEWVPVNPRPVMVTQQTVRN
LALGDKFFLRVTAVSSAGAGPPAVLDQPVHIQEITEAPKIRVPRHLRQTYIRQVGESVNLQIPFQGKPKP
QVSWTHNGHALDNQRVNVRSGDQDSILFIRSAQRADSGRYELTVHLEGLEAKASIDILVIEKPGPPSSIK
LLDVWGCNAALEWTPPQDTGNTELLGYTVQKADKRTGQWFTVLERYHPTTCTISDLIIGNSYSFRVFSEN
LCGLSDLATTTKELAHIHKADITAKPREFIERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKII
WMKNKMDIQGDPKYRAVSEQGVCTLEIRKPSPFDSGVYTCKAINVLGEASVDCRLEVKASATH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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