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Report for CCDS35706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35706.1 Public Mus musculus 1 Klhdc8a 23 108 98 CCDS HistoryNCBI Gene:213417Re-query CCDS DB by CCDS ID:35706.1Re-query CCDS DB by GeneID:213417See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046071.4 ENSMUSP00000038297.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046071.4Link to Ensembl Protein Viewer:ENSMUSP00000038297.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046071Re-query CCDS DB by Protein ID:ENSMUSP00000038297
Original member NCBI NM_144810.5 NP_659059.1 Updated not alive Link to Nucleotide Sequence:NM_144810.5Link to Protein Sequence:NP_659059.1Re-query CCDS DB by Nucleotide ID:NM_144810Re-query CCDS DB by Protein ID:NP_659059
Current member NCBI NM_144810.6 NP_659059.1 Accepted alive Link to Nucleotide Sequence:NM_144810.6Link to Protein Sequence:NP_659059.1Re-query CCDS DB by Nucleotide ID:NM_144810Re-query CCDS DB by Protein ID:NP_659059Link to BLAST:NP_659059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659059.1 350 Q91XA8 350 100% 0 0

Chromosomal Locations for CCDS 35706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 132299277 132299652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132302525 132302689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132302940 132303155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132303729 132303830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 132304599 132304792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGAAGTGCCCAATGTCAAGGACTTTCAGTGGAAGCGCCTTGCTCCACTGCCTAGCCGCCGGGTCTATT
GCTCACTGCTGGAGACTGGGGGGCAGGTCTATGCCATCGGGGGATGTGATGACAATGGCGTCCCTATGGA
CTGCTTCGAGGTCTACTCCCCCGAGGCCGACCAGTGGACCTCCCTGCCCTCCCTGCCCACAGCCCGGGCC
GGGGTAGCGATCACTGCCCTAGGAAAGCGGATTATGGTGATCGGGGGTGTGGGCACCAATCAACTGCCTG
TGAAGGTCGTGGAAATGTACAACATCGATGAGGGCAAGTGGAAGAAGAGAAGCGTCTTGCGCGAGGCTGC
CATGGGCATTTCTGTCACAGCCAAAGATTATCGAGTGTATGCCGCAGGAGGGATGGGCCTGGACCTACGT
CCACACAACTACTTGCAACACTATGACATGCTGAAGGACATGTGGGTGTCACTAGCTCCCATGCCCACCC
CAAGATACGCTGCCACCTCCTTCCTCCGGGGCTCCAAGATCTATGTGCTGGGGGGACGACAATCTAAGTA
TGCAGTCAATGCCTTCGAGGTCTTTGATATAGAGTCTCGGTCCTGGACCAAGTTCCCCAACATTCCCTGT
AAACGGGCTTTCTCCAGCTTTGTGACCCTGGACAACCACTTATACAGCCTAGGAGGCCTGCGCCAGGGCC
GTCTGTACCGGCAGCCCAAGTTCCTCCGGACAATGGATGTGTTCGACATGGAACAGGGGGGATGGCTGAA
GATGGAACGCTCATTCTTCCTCAAGAAACGCCGGGCAGACTTTGTGGCTGGTGGTCTGAGTGGAAGGGTC
ATAGTGGCTGGGGGCCTTGGAAACCAGCCCACTGTCCTGGAGACAGCAGAAGCATTCCACCCTGAGAAGA
ACAAGTGGGAGGCACTCCCCCCCATGCCCACGCCCCGCTGTGCCTGCTCCAGCATTGTCTTCAAGAACTG
CCTCCTGGCTGTGGGGGGTGTCAGCCAGGGACTGAGCGATGCGGTAGAGGCACTGTTTGTCTCTGACTCC
TAG

Translation (350 aa):
MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTSLPSLPTARA
GVAITALGKRIMVIGGVGTNQLPVKVVEMYNIDEGKWKKRSVLREAAMGISVTAKDYRVYAAGGMGLDLR
PHNYLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIESRSWTKFPNIPC
KRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGGLSGRV
IVAGGLGNQPTVLETAEAFHPEKNKWEALPPMPTPRCACSSIVFKNCLLAVGGVSQGLSDAVEALFVSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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