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Report for CCDS35699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35699.1 Public Mus musculus 1 Cd55b 23 108 98 CCDS HistoryNCBI Gene:13137Re-query CCDS DB by CCDS ID:35699.1Re-query CCDS DB by GeneID:13137See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 35699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112488.8 ENSMUSP00000108107.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112488.8Link to Ensembl Protein Viewer:ENSMUSP00000108107.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112488Re-query CCDS DB by Protein ID:ENSMUSP00000108107
Original member Current member NCBI NM_007827.3 NP_031853.2 Accepted alive Link to Nucleotide Sequence:NM_007827.3Link to Protein Sequence:NP_031853.2Re-query CCDS DB by Nucleotide ID:NM_007827Re-query CCDS DB by Protein ID:NP_031853Link to BLAST:NP_031853.2

Chromosomal Locations for CCDS 35699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130388608 130388729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130409872 130409892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130410629 130410691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130411393 130411539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130414049 130414240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130416839 130416924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130418108 130418207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130419601 130419792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130422115 130422300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130422865 130422958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGATCCCCGCGCAGGCGCCGGGGACTTGGTCATCACCACCACTGCTGCTGGTGCTGTCACTATCGCTGG
TGCTGTTGTTCCAAACTGTGTGCGGAGACTGCGGCCCACCTCCAGACATTCCTAATGCCAGGCCAATCTT
GGGCAGACACTCCAAGTTTGCTGAGCAAAGCAAAGTGGCATACTCGTGTAATAACGGCTTTAAACAAGTT
CCAGACAAGTCAAACATAGTTGTCTGTCTTGAAAATGGCCAATGGTCGAGCCACGAAACATTCTGTGAGA
AATCATGTGATACTCCAGAAAGACTGAGTTTTGCATCCCTCAAAAAAGAGTACTTCAACATGAATTTTTT
CCCAGTTGGTACTATTGTGGAATATGAGTGTCGGCCAGGATTTCGAAAACAACCTTCACTCTCAGGAAAA
TCAACTTGCCTTGAGGATTTAGTATGGTCTCCAGTTGCTCAGTTTTGTAAAAAAAAATCATGCCCTAATC
CTAAAGATCTGGATAATGGTCACATCAACATACCAACCGGCATATTATTCGGTTCAGAAATAAACTTCTC
ATGCAACCCAGGGTACAGGCTAGTCGGTATCACCTCTATTTTATGTACTATTATAGGAAATACTGTTGAT
TGGGATGATGAATTTCCAGTGTGCACAGAAATATTTTGTCCAGACCCACCAAAAATCAACAATGGAATAA
TGCGAGGGGAAAGCGATTCTTATAAATATAGCCAGGTGGTCATTTATTCATGTGACAAAGGCTTCATCCT
GTTTGGAAATTCTACCATATATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCC
CAGTGTATAGAGGAATCTAAGGTCCCAATTAAGAAACCAGTAGTTAATGTTCCAAGTACAGGAATCCCCT
CAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTC
CACAGTTAAAGTTCCAGCAACCCAGCATGAACCTGATACCACGACAAGAACATCTACAGACAAAGGAGAG
TCTAACTCAGGTGGTGACCGTTATATATATGGATTTGTTGCTGTTATTGCAATGATTGATAGCCTAATTA
TAGTCAAAACTCTTTGGACTATTTTAAGTCCAAACAGAAGGTCTGACTTTCAAGGAAAGGAGAGGAAGGA
TGTCTCAAAGTAA

Translation (400 aa):
MIPAQAPGTWSSPPLLLVLSLSLVLLFQTVCGDCGPPPDIPNARPILGRHSKFAEQSKVAYSCNNGFKQV
PDKSNIVVCLENGQWSSHETFCEKSCDTPERLSFASLKKEYFNMNFFPVGTIVEYECRPGFRKQPSLSGK
STCLEDLVWSPVAQFCKKKSCPNPKDLDNGHINIPTGILFGSEINFSCNPGYRLVGITSILCTIIGNTVD
WDDEFPVCTEIFCPDPPKINNGIMRGESDSYKYSQVVIYSCDKGFILFGNSTIYCTVSKSDVGQWSSPPP
QCIEESKVPIKKPVVNVPSTGIPSTPQKPTTESVPNPGDQPTPQKPSTVKVPATQHEPDTTTRTSTDKGE
SNSGGDRYIYGFVAVIAMIDSLIIVKTLWTILSPNRRSDFQGKERKDVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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