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Report for CCDS35646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35646.1 Public Mus musculus 1 Ncl 23 108 98 CCDS HistoryNCBI Gene:17975Re-query CCDS DB by CCDS ID:35646.1Re-query CCDS DB by GeneID:17975See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027438.7 ENSMUSP00000027438.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027438.7Link to Ensembl Protein Viewer:ENSMUSP00000027438.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027438Re-query CCDS DB by Protein ID:ENSMUSP00000027438
Original member Current member NCBI NM_010880.3 NP_035010.3 Accepted alive Link to Nucleotide Sequence:NM_010880.3Link to Protein Sequence:NP_035010.3Re-query CCDS DB by Nucleotide ID:NM_010880Re-query CCDS DB by Protein ID:NP_035010Link to BLAST:NP_035010.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035010.3 707 P09405 707 100% 0 0

Chromosomal Locations for CCDS 35646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86350620 86350696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86350812 86351035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86351367 86351493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86352198 86352319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86352510 86352633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86353126 86353280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86353732 86353855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86355020 86355144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356052 86356193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356371 86356457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356556 86356741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356957 86357452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86358107 86358223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86359206 86359223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGTGAAGCTCGCAAAGGCTGGCAAAACCCACGGTGAGGCCAAGAAAATGGCTCCTCCTCCAAAGGAGG
TGGAAGAGGATAGTGAAGATGAAGAAATGTCAGAAGATGAAGATGACAGCAGTGGAGAAGAGGAGGTTGT
CATCCCTCAGAAAAAAGGCAAAAAGGCTACCACAACCCCAGCAAAGAAGGTGGTTGTTTCACAAACAAAA
AAGGCTGCAGTTCCCACACCAGCTAAGAAAGCAGCTGTGACCCCAGGCAAAAAGGCAGTAGCCACACCAG
CTAAGAAAAACATTACACCAGCCAAAGTCATTCCAACACCGGGTAAGAAGGGAGCTGCACAAGCAAAAGC
GTTGGTACCAACTCCTGGTAAAAAGGGAGCTGCCACTCCAGCTAAGGGGGCTAAGAACGGTAAGAATGCC
AAGAAGGAAGACAGTGATGAGGATGAAGATGAAGAGGATGAAGATGATAGCGATGAGGATGAAGATGATG
AGGAAGAGGATGAGTTTGAGCCACCAATAGTAAAAGGAGTGAAGCCAGCAAAAGCAGCTCCTGCTGCTCC
TGCCTCAGAGGATGAGGAAGATGATGAGGATGAAGATGATGAGGAAGATGATGATGAAGAGGAGGAAGAT
GACTCTGAGGAAGAAGTTATGGAGATCACAACAGCCAAAGGAAAGAAAACTCCTGCAAAAGTTGTTCCTA
TGAAAGCCAAGAGTGTGGCTGAGGAGGAGGATGATGAGGAAGAGGATGAAGATGACGAGGATGAGGATGA
TGAGGAAGAGGATGACGAAGATGATGATGAGGAAGAAGAGGAGGAAGAACCTGTTAAAGCAGCACCTGGA
AAACGGAAGAAGGAGATGACCAAGCAGAAAGAAGCCCCTGAAGCCAAGAAACAGAAAGTAGAAGGCTCAG
AACCAACTACACCTTTCAATCTGTTCATTGGAAACCTTAATCCAAACAAGTCTGTTAATGAATTAAAATT
TGCCATCAGTGAACTTTTTGCTAAAAATGATCTTGCTGTTGTGGATGTCAGAACTGGTACAAATAGGAAA
TTTGGTTATGTGGACTTTGAGTCTGCTGAAGACCTAGAAAAGGCCTTGGAGCTCACTGGTTTAAAAGTGT
TTGGCAATGAAATTAAACTAGAAAAACCAAAAGGAAGAGATAGTAAGAAAGTTCGAGCTGCAAGAACACT
TCTAGCCAAAAACCTCTCTTTCAACATCACTGAGGATGAATTAAAGGAAGTGTTTGAAGACGCCATGGAG
ATCAGATTAGTCAGCCAGGATGGGAAAAGTAAAGGGATTGCTTATATTGAATTTAAGTCTGAAGCTGATG
CAGAGAAAAATTTGGAAGAAAAGCAGGGGGCAGAAATTGATGGACGATCTGTTTCACTCTACTATACTGG
AGAGAAAGGTCAAAGGCAAGAGAGAACTGGAAAGACCAGCACTTGGAGTGGTGAATCAAAGACTTTGGTT
TTAAGTAACCTTTCCTACAGTGCAACAAAAGAAACTCTTGAGGAAGTATTTGAGAAAGCAACTTTTATCA
AAGTGCCCCAGAACCCACATGGCAAACCTAAAGGGTATGCATTTATAGAATTTGCTTCATTTGAAGATGC
TAAAGAAGCTTTAAATTCCTGTAATAAAATGGAAATTGAGGGCAGAACAATCAGGCTGGAGTTGCAAGGA
TCCAATTCGAGAAGTCAACCATCCAAAACTCTGTTTGTCAAAGGTCTGTCTGAGGATACCACTGAAGAGA
CCTTAAAAGAATCATTTGAGGGCTCTGTTCGTGCAAGAATAGTCACTGATCGGGAAACTGGTTCTTCCAA
AGGGTTTGGTTTTGTAGACTTTAATAGTGAGGAAGATGCCAAAGCTGCCAAGGAGGCCATGGAAGATGGA
GAAATTGACGGAAACAAAGTTACCTTGGACTGGGCCAAACCTAAGGGTGAAGGTGGCTTTGGTGGTCGAG
GTGGAGGCAGAGGAGGTTTCGGAGGCAGAGGTGGAGGCAGAGGTGGAAGAGGTGGATTTGGAGGAAGAGG
CCGGGGAGGCTTTGGAGGTAGAGGAGGCTTCCGAGGCGGCAGAGGAGGAGGGGGAGACTTCAAGCCACAA
GGAAAGAAGACGAAGTTTGAATAG

Translation (707 aa):
MVKLAKAGKTHGEAKKMAPPPKEVEEDSEDEEMSEDEDDSSGEEEVVIPQKKGKKATTTPAKKVVVSQTK
KAAVPTPAKKAAVTPGKKAVATPAKKNITPAKVIPTPGKKGAAQAKALVPTPGKKGAATPAKGAKNGKNA
KKEDSDEDEDEEDEDDSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDEDEDDEEDDDEEEED
DSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEEDDEEEDEDDEDEDDEEEDDEDDDEEEEEEEPVKAAPG
KRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRK
FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAME
IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLV
LSNLSYSATKETLEEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG
SNSRSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG
EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDFKPQ
GKKTKFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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