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Report for CCDS35608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35608.1 Public Mus musculus 1 Xrcc5 23 108 98 CCDS HistoryNCBI Gene:22596Re-query CCDS DB by CCDS ID:35608.1Re-query CCDS DB by GeneID:22596See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027379.9 ENSMUSP00000027379.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027379.9Link to Ensembl Protein Viewer:ENSMUSP00000027379.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027379Re-query CCDS DB by Protein ID:ENSMUSP00000027379
Original member Current member NCBI NM_009533.2 NP_033559.2 Accepted alive Link to Nucleotide Sequence:NM_009533.2Link to Protein Sequence:NP_033559.2Re-query CCDS DB by Nucleotide ID:NM_009533Re-query CCDS DB by Protein ID:NP_033559Link to BLAST:NP_033559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033559.2 732 P27641 732 100% 0 0

Chromosomal Locations for CCDS 35608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72307547 72307567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72310435 72310548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72312408 72312591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72314154 72314202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72315459 72315581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72318999 72319190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72325074 72325188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72326216 72326354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72329926 72330038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72334636 72334698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72338960 72339097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72339989 72340079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72343009 72343142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72346228 72346424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72354243 72354336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72356817 72356886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72381619 72381728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72383358 72383454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72383702 72383769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72393896 72393967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72394708 72394722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGCGTGGTCCGGTAATAAGGCAGCTGTTGTGCTGTGTGTGGATGTGGGGGTTGCCATGGGTAACTCCT
TTCCTGGTGAAGAATCTCCAATTGAACAAGCAAAGAAAGTGATGACTATGTTTGTCCAACGACAGGTATT
TTCGGAGAGCAAAGATGAGATTGCGTTAGTCCTCTATGGCACAGATGGCACTGATAATGCCCTTGCTGGC
AAGGACCAGTATCAGAACATCACAGTGTGCAGACACCTGATGCTACCAGATTTTGATTTGCTGGAAGACA
TCGGAAACAAAATCCAGCCAAGTTCCCAGCAAGCCGACTTCCTGGACGCCCTGATTGTGTGCATGGATTT
GATTCAGCGTGAAACCATAGGGAAGAAGTTTGGGAAGAAGCATATTGAAGTGTTCACTGACCTCAGCAGC
CCGTTCAGCCAGGACCAACTGGACGTTATAATTTGTAACTTGAAGAAGTCTGGCATCTCTCTGCAGTTCT
TTTTGCCTTTTCCAATCGACAAGAATGGCGAGCCTGGCGAGAGAGGGGACCTGGACTCTGGCTTGGACCA
CCTCAAACCCTCCTTCCCTCAAAAAGGACTTACTGAGCAGCAAAAGGAAGGCATCCGCATGGTGACAAGG
GTGATGCTGTCCTTAGAAGGCGAAGACGGGCTGGATGAAATTTATTCCTTCAGTGAGAGTCTACGACAAC
TGTGCGTCTTTAAGAAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCCCAACTT
GTCTATAAAGATTGTAGCCTATAAATCGATTGTACAGGAGAAATTTAAGAAGAGTTGGGTAGTTGTGGAC
GCAAGAACGCTAAAGAAGGAAGATATACAAAAAGAGACTGTTTATTGCCTAAATGACGATGATGAAACTG
AAGTTTCCAAAGAGGACACTATTCAAGGGTACCGCTACGGAAGTGATATCATTCCTTTTTCTAAAGTGGA
TGAGGAACAAATGAAATATAAATCTGAGGGGAAGTGCTTCTCTGTTTTGGGATTTTGTAAATCTTCTCAG
GTTCATAGAAGATTCTTCATGGGACATCAAGTTCTAAAGGTCTTTGCAGCAAAGGATGATGAGGCGGCAG
CTGTTGCCCTTTCCTCTCTCGTTCATGCTTTGGATGAGTTAAACATGGTCGCCATCGTCCGATATGCTTA
TGACAAAAGATCTAATCCTCAAGTTGGTGTAGCCTTCCCTTACATTAAGGACGCCTATGAGTGTTTAGTT
TATGTGCAGCTGCCTTTCATGGAAGACTTGCGGCAATACATGTTTTCCTCGCTGAAAAACAATAAGAAGT
GCACTCCCACAGAGGCCCAGCTGAGCGCTATTGATGATCTGATTGATTCCATGAGCTTGGTAAAGAAAAA
CGAGGAAGAAGACATTGTTGAAGATTTGTTTCCAACCTCCAAAATTCCAAATCCTGAATTTCAGCGATTG
TACCAGTGTCTGCTGCATAGAGCCTTACATCTCCAGGAGCGGCTGCCCCCGATTCAGCAGCACATTTTGA
ATATGCTGGATCCCCCCACTGAGATGAAAGCAAAATGTGAGAGTCCACTCTCTAAAGTAAAGACCCTTTT
CCCTCTCACAGAAGTCATCAAGAAAAAGAACCAAGTGACTGCTCAGGACGTTTTCCAAGACAATCATGAA
GAGGGGCCCGCTGCTAAAAAATATAAAACTGAGAAAGAAGAAGATCACATCAGCATCTCCAGCCTGGCAG
AAGGGAACATCACCAAGGTTGGAAGTGTGAATCCTGTTGAAAACTTCCGTTTCCTAGTAAGACAGAAGAT
TGCCAGCTTTGAGGAAGCGAGTCTCCAGTTAATAAGTCACATCGAACAATTTTTGGATACCAATGAAACA
CTGTATTTTATGAAAAGTATGGACTGCATCAAAGCTTTCCGGGAGGAGGCCATTCAGTTTTCAGAAGAAC
AGCGCTTCAACAGCTTCCTGGAAGCCCTTCGAGAGAAAGTGGAAATTAAGCAATTAAATCATTTCTGGGA
AATTGTTGTTCAGGATGGAGTTACTCTGATCACCAAAGACGAAGGCCCAGGAAGCTCTATCACAGCTGAG
GAAGCCACAAAGTTTCTGGCCCCCAAAGACAAAGCAAAAGAAGATACAACGGGACCTGAAGAAGCTGGTG
ATGTGGATGATTTACTGGACATGATATAG

Translation (732 aa):
MAWSGNKAAVVLCVDVGVAMGNSFPGEESPIEQAKKVMTMFVQRQVFSESKDEIALVLYGTDGTDNALAG
KDQYQNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFLDALIVCMDLIQRETIGKKFGKKHIEVFTDLSS
PFSQDQLDVIICNLKKSGISLQFFLPFPIDKNGEPGERGDLDSGLDHLKPSFPQKGLTEQQKEGIRMVTR
VMLSLEGEDGLDEIYSFSESLRQLCVFKKIERRSMPWPCQLTIGPNLSIKIVAYKSIVQEKFKKSWVVVD
ARTLKKEDIQKETVYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQ
VHRRFFMGHQVLKVFAAKDDEAAAVALSSLVHALDELNMVAIVRYAYDKRSNPQVGVAFPYIKDAYECLV
YVQLPFMEDLRQYMFSSLKNNKKCTPTEAQLSAIDDLIDSMSLVKKNEEEDIVEDLFPTSKIPNPEFQRL
YQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCESPLSKVKTLFPLTEVIKKKNQVTAQDVFQDNHE
EGPAAKKYKTEKEEDHISISSLAEGNITKVGSVNPVENFRFLVRQKIASFEEASLQLISHIEQFLDTNET
LYFMKSMDCIKAFREEAIQFSEEQRFNSFLEALREKVEIKQLNHFWEIVVQDGVTLITKDEGPGSSITAE
EATKFLAPKDKAKEDTTGPEEAGDVDDLLDMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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