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Report for CCDS34872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34872.1 Public Homo sapiens 8 ESCO2 24 110 108 CCDS HistoryNCBI Gene:157570Re-query CCDS DB by CCDS ID:34872.1Re-query CCDS DB by GeneID:157570See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305188.13 ENSP00000306999.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305188.13Link to Ensembl Protein Viewer:ENSP00000306999.8Re-query CCDS DB by Nucleotide ID:ENST00000305188Re-query CCDS DB by Protein ID:ENSP00000306999
Original member Current member NCBI NM_001017420.3 NP_001017420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017420.3Link to Protein Sequence:NP_001017420.1Re-query CCDS DB by Nucleotide ID:NM_001017420Re-query CCDS DB by Protein ID:NP_001017420Link to BLAST:NP_001017420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017420.1 601 Q56NI9-1 601 100% 0 0

Chromosomal Locations for CCDS 34872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27775515 27775567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27776362 27777169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27780174 27780267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27784000 27784057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27787885 27788002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27788847 27788978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27791963 27792052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27792668 27792811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27799541 27799716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27803306 27803438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGCAGCTCTTACTCCAAGGAAGAGGAAGCAGGATTCTTTGAAGTGTGACAGCCTTTTACACTTCACTG
AAAATCTGTTTCCATCACCTAATAAAAAGCACTGTTTTTATCAAAACAGTGATAAAAATGAAGAAAACCT
GCATTGCTCTCAACAAGAGCATTTTGTTTTAAGTGCGCTCAAAACAACTGAAATAAATAGACTGCCATCA
GCAAATCAAGGCTCACCATTTAAATCTGCGCTCTCCACTGTATCTTTTTACAACCAAAATAAGTGGTACC
TCAATCCACTGGAGAGAAAGCTGATAAAAGAGAGTAGATCTACTTGTCTAAAAACTAATGATGAAGATAA
ATCTTTTCCCATTGTGACAGAAAAAATGCAAGGAAAACCAGTCTGCTCCAAGAAGAACAACAAAAAACCA
CAGAAGAGTTTAACTGCTAAGTATCAACCAAAGTATAGACACATCAAGCCTGTATCAAGGAATTCTAGAA
ATTCCAAGCAAAATCGAGTGATCTATAAGCCAATTGTGGAGAAGGAAAATAATTGTCATTCAGCTGAAAA
TAATTCCAATGCTCCTCGGGTTCTGAGCCAAAAAATAAAACCACAAGTTACACTCCAGGGTGGAGCAGCA
TTTTTTGTTAGAAAAAAATCTTCTCTTAGAAAATCGTCCCTGGAAAATGAGCCGTCACTGGGACGCACCC
AAAAGAGTAAATCAGAAGTCATTGAAGATTCTGATGTAGAGACTGTCAGTGAAAAAAAAACTTTTGCGAC
AAGGCAAGTGCCAAAGTGCTTGGTCCTAGAAGAGAAATTGAAAATTGGACTACTGAGTGCAAGCAGTAAA
AATAAAGAGAAATTAATAAAGGATTCATCAGATGACAGAGTTTCTTCAAAGGAACATAAAGTTGATAAAA
ATGAGGCTTTTTCTTCAGAGGATTCTCTTGGTGAGAATAAGACAATTTCTCCTAAGTCCACTGTCTATCC
AATCTTCAGTGCATCTTCAGTCAATTCAAAAAGATCTTTAGGTGAAGAACAGTTTTCTGTGGGATCTGTC
AACTTCATGAAACAGACCAATATCCAGAAAAATACTAATACCAGAGATACAAGTAAAAAAACAAAAGACC
AGCTCATCATCGACGCTGGTCAGAAACATTTTGGGGCTACTGTGTGCAAGTCTTGTGGTATGATATATAC
TGCTTCCAACCCTGAAGATGAAATGCAGCATGTACAGCATCACCACAGGTTTCTGGAAGGAATCAAATAT
GTGGGTTGGAAGAAAGAACGTGTAGTAGCAGAGTTTTGGGATGGGAAAATCGTGTTGGTTCTGCCACATG
ATCCAAGCTTTGCTATCAAAAAGGTAGAAGATGTCCAAGAACTTGTTGATAATGAATTGGGCTTCCAGCA
AGTTGTTCCTAAATGTCCAAACAAAATAAAAACTTTTCTTTTTATATCTGATGAAAAGAGAGTAGTTGGG
TGTTTAATTGCAGAACCCATCAAACAGGCATTTCGTGTCCTGTCTGAACCAATTGGTCCAGAATCCCCAA
GCTCTACGGAATGTCCTAGGGCTTGGCAATGTTCAGATGTACCAGAACCTGCAGTCTGTGGGATAAGTAG
AATCTGGGTTTTCAGACTGAAGAGAAGAAAGCGCATTGCAAGACGACTGGTTGATACCCTCAGGAATTGC
TTCATGTTTGGCTGTTTTCTCAGCACTGATGAAATAGCATTTTCTGACCCAACACCAGATGGCAAGTTAT
TTGCAACCAAGTACTGCAACACCCCTAATTTCCTCGTATATAATTTTAATAGTTAA

Translation (601 aa):
MAALTPRKRKQDSLKCDSLLHFTENLFPSPNKKHCFYQNSDKNEENLHCSQQEHFVLSALKTTEINRLPS
ANQGSPFKSALSTVSFYNQNKWYLNPLERKLIKESRSTCLKTNDEDKSFPIVTEKMQGKPVCSKKNNKKP
QKSLTAKYQPKYRHIKPVSRNSRNSKQNRVIYKPIVEKENNCHSAENNSNAPRVLSQKIKPQVTLQGGAA
FFVRKKSSLRKSSLENEPSLGRTQKSKSEVIEDSDVETVSEKKTFATRQVPKCLVLEEKLKIGLLSASSK
NKEKLIKDSSDDRVSSKEHKVDKNEAFSSEDSLGENKTISPKSTVYPIFSASSVNSKRSLGEEQFSVGSV
NFMKQTNIQKNTNTRDTSKKTKDQLIIDAGQKHFGATVCKSCGMIYTASNPEDEMQHVQHHHRFLEGIKY
VGWKKERVVAEFWDGKIVLVLPHDPSFAIKKVEDVQELVDNELGFQQVVPKCPNKIKTFLFISDEKRVVG
CLIAEPIKQAFRVLSEPIGPESPSSTECPRAWQCSDVPEPAVCGISRIWVFRLKRRKRIARRLVDTLRNC
FMFGCFLSTDEIAFSDPTPDGKLFATKYCNTPNFLVYNFNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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