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Report for CCDS34151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34151.1 Public Homo sapiens 5 RIMOC1 24 110 108 CCDS HistoryNCBI Gene:285636Re-query CCDS DB by CCDS ID:34151.1Re-query CCDS DB by GeneID:285636See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34151.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381647.7 ENSP00000371061.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381647.7Link to Ensembl Protein Viewer:ENSP00000371061.2Re-query CCDS DB by Nucleotide ID:ENST00000381647Re-query CCDS DB by Protein ID:ENSP00000371061
Original member Current member NCBI NM_175921.6 NP_787117.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175921.6Link to Protein Sequence:NP_787117.3Re-query CCDS DB by Nucleotide ID:NM_175921Re-query CCDS DB by Protein ID:NP_787117Link to BLAST:NP_787117.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787117.3 294 A6NDU8 294 100% 0 0

Chromosomal Locations for CCDS 34151.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 41904368 41904467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41907736 41907842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41909746 41909892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41911048 41911179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41912069 41912183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41917016 41917299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGGCCGCAGTCTCTAGTGTGGTGAGACGAGTGGAAGAGCTCGGGGATCTGGCTCAGGCCCACATAC
AGCAACTTAGCGAAGCTGCCGGTGAAGATGATCACTTTTTAATTCGGGCCTCTGCAGCATTAGAAAAATT
GAAACTCCTGTGTGGAGAAGAGAAAGAATGTTCAAATCCATCAAATCTTCTAGAACTTTACACACAGGCT
ATTTTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAAGATTTTCCTGAAGACTCTTCTTCAC
AGAAAGTAAAAGAGCTGATTAGTTTTCTTTCAGAACCAGAAATTTTAGTAAAGGAAAATAATATGCATCC
AAAACACTGCAATTTGCTTGGGGATGAGCTACTGGAATGTCTCTCTTGGAGACGAGGAGCCCTGCTGTAT
ATGTATTGTCATTCTCTTACCAAAAGAAGAGAGTGGCTCTTAAGAAAATCCAGTTTGCTTAAAAAGTACC
TTCTTGATGGAATCAGTTACTTGCTACAGATGCTAAATTATCGATGTCCTATCCAGTTAAATGAAGGAGT
TTCTTTCCAAGATCTAGACACAGCTAAATTACTGAGTGCAGGAATATTTAGTGACATTCATCTGCTGGCT
ATGATGTACAGTGGAGAAATGTGTTACTGGGGATCGAAGTATTGTGCTGATCAGCAACCAGAAAATCATG
AAGTGGATACTAGTGTGTCTGGAGCGGGCTGCACTACATACAAGGAACCCTTGGATTTCCGAGAAGTAGG
AGAAAAAATCTTGAAAAAGTATGTATCTGTGTGTGAAGGACCCCTGAAAGAACAAGAATGGAATACAACG
AATGCAAAACAAATTTTAAACTTCTTTCATCATCGCTGTAACTAG

Translation (294 aa):
MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQA
ILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLECLSWRRGALLY
MYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCPIQLNEGVSFQDLDTAKLLSAGIFSDIHLLA
MMYSGEMCYWGSKYCADQQPENHEVDTSVSGAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTT
NAKQILNFFHHRCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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