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Report for CCDS30800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30800.1 Public Homo sapiens 1 LRIF1 24 110 108 CCDS HistoryNCBI Gene:55791Re-query CCDS DB by CCDS ID:30800.1Re-query CCDS DB by GeneID:55791See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369763.5 ENSP00000358778.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369763.5Link to Ensembl Protein Viewer:ENSP00000358778.4Re-query CCDS DB by Nucleotide ID:ENST00000369763Re-query CCDS DB by Protein ID:ENSP00000358778
Original member Current member NCBI NM_018372.4 NP_060842.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018372.4Link to Protein Sequence:NP_060842.3Re-query CCDS DB by Nucleotide ID:NM_018372Re-query CCDS DB by Protein ID:NP_060842Link to BLAST:NP_060842.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060842.3 769 Q5T3J3-1 769 100% 0 0

Chromosomal Locations for CCDS 30800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110947959 110948399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110949851 110950123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110951288 110952815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110963621 110963688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGTCAAATAACCTACGGAGGGTCTTCCTGAAACCCGCAGAGGAAAATTCAGGCAACGCCTCGCGTTGTG
TTTCAGGCTGCATGTACCAAGTAGTTCAGACGATTGGCTCGGATGGAAAAAATCTTCTGCAATTACTTCC
AATTCCTAAGTCTTCTGGAAATCTTATACCACTAGTTCAATCTTCAGTCATGTCTGATGCTTTGAAAGGG
AATACAGGAAAACCAGTTCAAGTTACTTTTCAGACTCAGATTTCCAGCTCTTCCACAAGTGCATCAGTTC
AATTGCCCATTTTTCAGCCAGCCAGTTCTTCAAACTATTTTCTTACAAGAACAGTAGATACATCAGAAAA
AGGTAGAGTTACTTCTGTGGGAACTGGAAATTTTTCTTCATCAGTTTCTAAAGTTCAGAGTCATGGTGTG
AAAATTGATGGACTCACCATGCAAACATTTGCTGTTCCTCCCTCAACACAAAAAGACTCATCTTTTATTG
TAGTTAATACCCAGAGTCTTCCAGTGACTGTGAAGTCTCCAGTTTTGCCTTCTGGGCATCATTTACAGAT
TCCAGCCCATGCTGAAGTGAAATCTGTACCAGCGTCATCATTGCCTCCTTCAGTGCAGCAAAAGATACTT
GCAACTGCCACCACCAGTACCTCAGGAATGGTTGAGGCCTCCCAAATGCCAACCGTTATTTATGTATCTC
CTGTAAATACAGTGAAAAATGTAGTTACCAAGAACTTTCAAAACATTTACCCAAAACCTGTTACAGAAAT
AGCAAAGCCAGTAATACTAAATACCACACAAATTCCAAAGAATGTTGCTACAGAGACACAATTGAAAGGT
GGTCAGCATTCTCAAGCTGCTCCAGTGAAATGGATTTTCCAAGATAATCTACAGCCTTTTACGCCATCTC
TTGTTCCTGTTAAGTCTTCAAATAATGTGGCTTCAAAGATTTTAAAAACTTTTGTAGATAGGAAAAATTT
GGGAGATAATACTATAAATATGCCACCATTGAGTACCATCGATCCTAGTGGGACGCGATCCAAAAATATG
CCTATTAAAGATAATGCTTTGGTTATGTTTAATGGGAAAGTCTATCTGTTGGCTAAAAAGGGGACAGATG
TTCTGCCATCACAAATTGACCAACAGAATTCTGTTTCTCCTGATACTCCAGTAAGAAAAGACACGTTACA
GACAGTGAGTTCAAGTCCAGTCACAGAAATATCCAGAGAGGTTGTAAATATTGTTTTGGCTAAAAGTAAA
TCTTCCCAGATGGAGACAAAATCACTTTCCAATACCCAGCTTGCTTCCATGGCCAATCTAAGGGCAGAGA
AGAATAAAGTGGAGAAACCATCTCCTTCTACCACAAATCCACATATGAACCAATCCAGTAACTACTTAAA
ACAGAGTAAGACTTTATTCACAAATCCAATCTTTCCAGTTGGATTTAGTACAGGACACAATGCCCCCAGA
AAAGTAACAGCCGTCATTTATGCTAGAAAAGGAAGTGTCCTCCAGAGCATAGAGAAAATAAGTTCCTCTG
TTGATGCAACAACTGTTACTTCACAACAGTGTGTTTTCAGAGACCAAGAACCAAAGATCCATAATGAGAT
GGCATCAACATCAGATAAAGGTGCCCAAGGAAGAAATGACAAGAAAGATTCTCAAGGAAGAAGTAATAAG
GCATTACATCTGAAGAGTGATGCTGAATTTAAAAAGATATTTGGCCTTACTAAGGATTTGAGAGTGTGCC
TTACTCGAATTCCTGACCATTTGACCTCTGGAGAAGGTTTCGATTCCTTTAGCAGTTTGGTAAAGAGTGG
TACTTACAAAGAGACAGAGTTTATGGTGAAGGAAGGAGAGAGAAAACAGCAGAATTTTGATAAGAAAAGA
AAAGCAAAAACTAATAAGAAGATGGATCACATAAAGAAGAGAAAAACAGAGAATGCTTATAACGCAATCA
TAAATGGGGAAGCTAATGTCACCGGTTCCCAACTCCTAAGCAGTATTTTACCAACTTCAGATGTGTCACA
ACATAACATTCTCACGAGTCACAGCAAAACCAGACAAGAAAAGAGAACTGAGATGGAATACTATACCCAT
GAGAAGCAAGAGAAAGGCACTTTGAATTCAAATGCAGCTTATGAACAAAGTCATTTCTTCAATAAAAATT
ATACCGAAGATATTTTCCCAGTGACACCACCGGAGTTAGAAGAAACCATTCGAGATGAAAAAATAAGAAG
ACTTAAGCAGGTGCTGAGAGAGAAAGAAGCAGCTCTTGAAGAAATGCGTAAGAAGATGCACCAAAAATAA

Translation (769 aa):
MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQSSVMSDALKG
NTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRVTSVGTGNFSSSVSKVQSHGV
KIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLPSGHHLQIPAHAEVKSVPASSLPPSVQQKIL
ATATTSTSGMVEASQMPTVIYVSPVNTVKNVVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKG
GQHSQAAPVKWIFQDNLQPFTPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNM
PIKDNALVMFNGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK
SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPVGFSTGHNAPR
KVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMASTSDKGAQGRNDKKDSQGRSNK
ALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNFDKKR
KAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTH
EKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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