NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3072.1 Public Homo sapiens 3 CPNE4 24 110 108 CCDS HistoryNCBI Gene:131034Re-query CCDS DB by CCDS ID:3072.1Re-query CCDS DB by GeneID:131034See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429747.6 ENSP00000411904.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429747.6Link to Ensembl Protein Viewer:ENSP00000411904.1Re-query CCDS DB by Nucleotide ID:ENST00000429747Re-query CCDS DB by Protein ID:ENSP00000411904
Original member Current member EBI ENST00000512055.5 ENSP00000421705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512055.5Link to Ensembl Protein Viewer:ENSP00000421705.1Re-query CCDS DB by Nucleotide ID:ENST00000512055Re-query CCDS DB by Protein ID:ENSP00000421705
Original member Current member EBI ENST00000511604.5 ENSP00000423811.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511604.5Link to Ensembl Protein Viewer:ENSP00000423811.1Re-query CCDS DB by Nucleotide ID:ENST00000511604Re-query CCDS DB by Protein ID:ENSP00000423811
Original member Current member NCBI NM_130808.3 NP_570720.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130808.3Link to Protein Sequence:NP_570720.1Re-query CCDS DB by Nucleotide ID:NM_130808Re-query CCDS DB by Protein ID:NP_570720Link to BLAST:NP_570720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570720.1 557 Q96A23-1 557 100% 0 0

Chromosomal Locations for CCDS 3072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 131535195 131535329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131542557 131542793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131549947 131550080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131552440 131552491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131555497 131555551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131564216 131564349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131575071 131575130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131581579 131581665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131587484 131587582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131669675 131669764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131685875 131685958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131696542 131696616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131699909 131699980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131723446 131723625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131905264 131905443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGAAGAAGATGAGCAACATTTATGAGTCCGCTGCCAACACACTGGGAATCTTTAACAGCCCCTGCCTGA
CCAAAGTTGAGCTGCGTGTGGCGTGCAAAGGCATTTCTGACAGAGATGCCCTTTCCAAACCAGACCCCTG
TGTCATCCTCAAGATGCAGTCTCATGGGCAGTGGTTTGAGGTTGACAGGACTGAGGTGATTCGCACCTGC
ATAAACCCAGTGTACTCAAAACTGTTTACTGTGGACTTTTACTTTGAGGAGGTGCAGCGCCTGCGGTTTG
AAGTCCATGACATCAGCAGCAACCACAATGGGCTGAAGGAGGCCGACTTCCTTGGTGGCATGGAGTGCAC
ACTTGGCCAGATTGTTTCCCAGAGAAAGCTGTCCAAATCCTTGCTGAAGCATGGGAACACAGCAGGGAAA
TCTTCCATCACGGTGATTGCTGAAGAATTATCTGGCAATGACGACTATGTTGAGCTTGCATTCAATGCAC
GGAAATTGGATGACAAGGATTTCTTCAGTAAATCTGACCCATTTCTGGAAATTTTTCGTATGAATGATGA
TGCAACTCAGCAGCTGGTGCACCGAACTGAGGTTGTGATGAATAACTTAAGCCCAGCCTGGAAATCATTC
AAAGTATCTGTAAATTCTCTATGCAGCGGAGACCCAGACCGCCGGCTAAAGTGCATAGTATGGGACTGGG
ACTCCAATGGCAAGCATGACTTCATTGGAGAATTCACCTCGACATTCAAGGAGATGAGAGGAGCAATGGA
AGGGAAACAGGTGCAGTGGGAGTGCATCAATCCCAAGTACAAAGCCAAGAAGAAGAATTACAAGAACTCA
GGCACTGTGATTCTGAATCTGTGCAAGATTCACAAGATGCATTCTTTCTTGGACTACATCATGGGTGGCT
GCCAAATCCAGTTTACAGTAGCTATAGATTTCACTGCCTCAAACGGGGACCCCAGGAACAGCTGTTCCTT
GCACTACATCCACCCTTACCAACCCAATGAGTATCTGAAAGCTTTGGTAGCTGTGGGGGAGATTTGCCAA
GACTATGACAGTGACAAAATGTTCCCTGCCTTTGGGTTTGGCGCCAGGATACCTCCAGAGTACACGGTCT
CTCATGACTTTGCAATCAACTTTAATGAAGACAACCCAGAATGTGCAGGAATTCAAGGAGTTGTGGAAGC
CTATCAGAGCTGTCTTCCTAAGCTCCAACTCTACGGTCCCACCAACATTGCCCCCATCATCCAGAAGGTT
GCCAAGTCAGCGTCAGAGGAAACTAACACCAAGGAGGCATCGCAATACTTCATCCTGCTGATCCTGACAG
ATGGTGTTATCACAGACATGGCCGACACCCGGGAGGCCATTGTCCATGCCTCCCACCTCCCCATGTCAGT
CATCATCGTGGGAGTAGGGAACGCTGACTTCAGTGACATGCAGATGCTGGACGGTGATGATGGGATTCTG
AGGTCACCCAAGGGAGAGCCTGTTCTTCGAGACATCGTCCAGTTCGTGCCCTTCAGGAACTTCAAACACG
CATCTCCAGCTGCCCTGGCAAAGAGCGTGCTGGCTGAAGTCCCAAACCAAGTTGTGGACTATTACAATGG
CAAAGGAATTAAACCAAAATGTTCATCAGAAATGTATGAATCTTCCAGAACACTAGCACCATGA

Translation (557 aa):
MKKMSNIYESAANTLGIFNSPCLTKVELRVACKGISDRDALSKPDPCVILKMQSHGQWFEVDRTEVIRTC
INPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGK
SSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSF
KVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNS
GTVILNLCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQ
DYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKV
AKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGIL
RSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH