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Report for CCDS30535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30535.1 Public Mus musculus X Hccs 23 108 98 CCDS HistoryNCBI Gene:15159Re-query CCDS DB by CCDS ID:30535.1Re-query CCDS DB by GeneID:15159See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033717.8 ENSMUSP00000033717.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033717.8Link to Ensembl Protein Viewer:ENSMUSP00000033717.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033717Re-query CCDS DB by Protein ID:ENSMUSP00000033717
Original member Current member EBI ENSMUST00000112115.1 ENSMUSP00000107743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112115.1Link to Ensembl Protein Viewer:ENSMUSP00000107743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112115Re-query CCDS DB by Protein ID:ENSMUSP00000107743
Original member NCBI NM_001331049.1 NP_001317978.1 Updated not alive Link to Nucleotide Sequence:NM_001331049.1Link to Protein Sequence:NP_001317978.1Re-query CCDS DB by Nucleotide ID:NM_001331049Re-query CCDS DB by Protein ID:NP_001317978
Current member NCBI NM_001331049.2 NP_001317978.1 Accepted alive Link to Nucleotide Sequence:NM_001331049.2Link to Protein Sequence:NP_001317978.1Re-query CCDS DB by Nucleotide ID:NM_001331049Re-query CCDS DB by Protein ID:NP_001317978Link to BLAST:NP_001317978.1
Original member NCBI NM_001331050.1 NP_001317979.1 Updated not alive Link to Nucleotide Sequence:NM_001331050.1Link to Protein Sequence:NP_001317979.1Re-query CCDS DB by Nucleotide ID:NM_001331050Re-query CCDS DB by Protein ID:NP_001317979
Current member NCBI NM_001331050.2 NP_001317979.1 Accepted alive Link to Nucleotide Sequence:NM_001331050.2Link to Protein Sequence:NP_001317979.1Re-query CCDS DB by Nucleotide ID:NM_001331050Re-query CCDS DB by Protein ID:NP_001317979Link to BLAST:NP_001317979.1
Original member NCBI NM_008222.5 NP_032248.3 Updated not alive Link to Nucleotide Sequence:NM_008222.5Link to Protein Sequence:NP_032248.3Re-query CCDS DB by Nucleotide ID:NM_008222Re-query CCDS DB by Protein ID:NP_032248
Current member NCBI NM_008222.6 NP_032248.3 Accepted alive Link to Nucleotide Sequence:NM_008222.6Link to Protein Sequence:NP_032248.3Re-query CCDS DB by Nucleotide ID:NM_008222Re-query CCDS DB by Protein ID:NP_032248Link to BLAST:NP_032248.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317978.1 272 P53702 272 100% 0 0
NP_001317979.1 272 P53702 272 100% 0 0
NP_032248.3 272 P53702 272 100% 0 0

Chromosomal Locations for CCDS 30535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 169312824 169313022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169313588 169313674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169315602 169315721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169316546 169316694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169316996 169317147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169319438 169319549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGGTGCCTCAGCATCTTCTCCTGCTACTGCAGTAAACGCCTCGAATGCTTCAGATGGTCAGCCAGCTT
CACCACCTTCAGGATGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGA
CCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCTATGATTATGTGGAATGC
CCTGTTACTGGTGCTAGAGCTAAGGATAAGGAGAGCCTCGATCCTTCAAACCTGATGCCACCACCTAATC
AGACACCATCCCCAGATCAGCCATTTACTTTGTCTACCTCAAGAGAGGAGTCATCAATTCCAAGAGCTGA
CTCTGAGAAAAAGTGGGTTTACCCTTCTGAACAGATGTTCTGGAATGCCATGTTACGGAAAGGGTGGAAG
TGGAAAGATGATGATATTAGTCAGAAAGATATGTACAATATCATTAGAATTCACAATCAGAATAATGAGC
AAGCGTGGAAGGAGATTTTAAAATGGGAAGCCCTTCATGCTCATGAGTGTCCTTGTGGCCCATCGTTGGT
CCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGGTATGAATTG
CCTTTTGACCGCCATGACTGGATCATCAATCGTTGTGGCACAGAAGTTAGATATGTGATTGATTACTATG
ATGGTGGTGAGGTGAACAAGGAGTACCAGTTCACTATCCTGGATGTGCGTCCTGCCTTTGATTCATTCTC
TGCAGTATGGGACAGAATGAAGGTTGCTTGGTGGCGCTGGACTTCGTAA

Translation (272 aa):
MGASASSPATAVNASNASDGQPASPPSGCPMHKGQRKGCPVTAATSDLTSESKAHTVPAHQDRAYDYVEC
PVTGARAKDKESLDPSNLMPPPNQTPSPDQPFTLSTSREESSIPRADSEKKWVYPSEQMFWNAMLRKGWK
WKDDDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAHECPCGPSLVRFGGKAREYSPRARIRSWMGYEL
PFDRHDWIINRCGTEVRYVIDYYDGGEVNKEYQFTILDVRPAFDSFSAVWDRMKVAWWRWTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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