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Report for CCDS30492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30492.1 Public Mus musculus X Magea5 23 108 98 CCDS HistoryNCBI Gene:17141Re-query CCDS DB by CCDS ID:30492.1Re-query CCDS DB by GeneID:17141See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069556.3 ENSMUSP00000065852.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069556.3Link to Ensembl Protein Viewer:ENSMUSP00000065852.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000069556Re-query CCDS DB by Protein ID:ENSMUSP00000065852
Original member Current member EBI ENSMUST00000169540.7 ENSMUSP00000132644.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169540.7Link to Ensembl Protein Viewer:ENSMUSP00000132644.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169540Re-query CCDS DB by Protein ID:ENSMUSP00000132644
Original member Current member NCBI NM_020018.1 NP_064402.1 Accepted alive Link to Nucleotide Sequence:NM_020018.1Link to Protein Sequence:NP_064402.1Re-query CCDS DB by Nucleotide ID:NM_020018Re-query CCDS DB by Protein ID:NP_064402Link to BLAST:NP_064402.1

Chromosomal Locations for CCDS 30492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155053432 155054394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCTGATTTCCATAACACCCAATACTGCAACCTCCAAGAGAGTGCTCAGGCCCAACAGGAATTAGACA
ATGACCAGGAGACCATGGAGACATCCGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGGAG
TGGAATACCAAGTCCTCCCCAGAGTCCTCAGAGAGCCTACTCTCCCTGTGTGGCACTGGCCTCCATCCCT
GATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGAGGGCCTGGAAGACCCACTTTATTTGTTGCACA
ATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTGGTTTTAAAATACCAAATGAAGGCATTCAC
TACCAAAGCAGAAATGTTGGAAAGTATTGGTAGAGAGTATGAGGAGTACTACCCTCTGATCTTTAGTGAG
GCCTCTGAGTGCTTGAAGATGGTCTTTGGCCTTGACATGGTAGAAATAGACCCCTCTGTCCATTCCTATA
TCCTTGTCACTGCCCTGGGGATCACCTATGATGGGATGATGACTGATGTTCAGGGTATGCCCAAGACAGG
TATCCTCATAGCTGTACTGAGTGTCATTTTCATGAAGGGAAACTATGTCAGTGAGGAGATTATCTGGGAA
ATGCTGAATAACATAGGGTTGTATGGTGGGAGGAATCCTTACATACATAAAGACCCCAGGAAGCTCATCT
CTGAGGAGTTTGTGCAGGAAGGGTACCTGGAATACAGGCAGGTGCCCAATAGTGATCCTCCTAGCTATGG
GTTCCTGTGGGGCCCAAGGGCTTTTGCAGAAACCAGCAAAATGAAAGTCTTACAGTTTTTTGCCAGCATT
AATAAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCTTTGCAAGATGAGATAGACAGGACCA
AGGCCTGGATCTTGAACAGATGCTCCAACTCCTCTGACCTGCTCACATTCTAG

Translation (320 aa):
MADFHNTQYCNLQESAQAQQELDNDQETMETSEEEEDTTTSNKVYGSGIPSPPQSPQRAYSPCVALASIP
DSPSEEASIKGSEGLEDPLYLLHNAQNTKVYDLVDFLVLKYQMKAFTTKAEMLESIGREYEEYYPLIFSE
ASECLKMVFGLDMVEIDPSVHSYILVTALGITYDGMMTDVQGMPKTGILIAVLSVIFMKGNYVSEEIIWE
MLNNIGLYGGRNPYIHKDPRKLISEEFVQEGYLEYRQVPNSDPPSYGFLWGPRAFAETSKMKVLQFFASI
NKTHPRAYPEKYAEALQDEIDRTKAWILNRCSNSSDLLTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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