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Report for CCDS30464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30464.1 Public Mus musculus X Pfkfb1 23 108 98 CCDS HistoryNCBI Gene:18639Re-query CCDS DB by CCDS ID:30464.1Re-query CCDS DB by GeneID:18639See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080884.10 ENSMUSP00000079692.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080884.10Link to Ensembl Protein Viewer:ENSMUSP00000079692.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080884Re-query CCDS DB by Protein ID:ENSMUSP00000079692
Current member NCBI NM_001374171.1 NP_001361100.1 Accepted alive Link to Nucleotide Sequence:NM_001374171.1Link to Protein Sequence:NP_001361100.1Re-query CCDS DB by Nucleotide ID:NM_001374171Re-query CCDS DB by Protein ID:NP_001361100Link to BLAST:NP_001361100.1
Current member NCBI NM_001374172.1 NP_001361101.1 Accepted alive Link to Nucleotide Sequence:NM_001374172.1Link to Protein Sequence:NP_001361101.1Re-query CCDS DB by Nucleotide ID:NM_001374172Re-query CCDS DB by Protein ID:NP_001361101Link to BLAST:NP_001361101.1
Original member NCBI NM_008824.3 NP_032850.1 Updated not alive Link to Nucleotide Sequence:NM_008824.3Link to Protein Sequence:NP_032850.1Re-query CCDS DB by Nucleotide ID:NM_008824Re-query CCDS DB by Protein ID:NP_032850
Current member NCBI NM_008824.4 NP_032850.1 Accepted alive Link to Nucleotide Sequence:NM_008824.4Link to Protein Sequence:NP_032850.1Re-query CCDS DB by Nucleotide ID:NM_008824Re-query CCDS DB by Protein ID:NP_032850Link to BLAST:NP_032850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361100.1 448 P70266-2 448 100% 0 0
NP_001361101.1 448 P70266-2 448 100% 0 0
NP_032850.1 448 P70266-2 448 100% 0 0

Chromosomal Locations for CCDS 30464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150590057 150590084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150608586 150608711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150611006 150611099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150612913 150612979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150613877 150613951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150620769 150620825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150622082 150622203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150625157 150625364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150628740 150628886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150634523 150634627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150639581 150639710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150641915 150641977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150643169 150643233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150643563 150643622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGAAGAAAAAGCCTCTAAGAGAGCAGCCTCCATACCACAGTTCACTAATTCCCCCACAATGGTGATCA
TGGTGGGTTTACCAGCTCGAGGCAAGACCTACATCTCTACGAAGCTCACACGCTATCTCAACTGGATAGG
AACACCGACTAAAGTGTTTAATTTAGGTCAGTATCGACGAGAGGCAGTGAGCTACAGGAACTATGAATTC
TTTCGCCCAGACAACATGGAGGCCCAACTTATCAGGAAGCAGTGTGCTCTAGCAGCCCTAAAGGATGTCC
ATAAGTATCTCAGCCGTGAGGAAGGTCACGTTGCGGTTTTTGATGCCACCAACACTACCAGAGAACGACG
ATCATTGATTCTGCAGTTTGCTAAAGAACATGGTTACAAGGTCTTCTTTATTGAGTCTATTTGTAATGAC
CCAGACATCATTGCAGAAAACATCAAGCAAGTGAAACTCGGCAGTCCTGATTACATAGACTGTGACCAAG
AAAAGGTTTTAGAAGACTTTCTAAAGAGAATTGAGTGCTATGAGATCAACTACCAGCCTTTGGATGAGGA
ATTGGACAGCCACCTGTCCTACATCAAGATCTTCGATGTGGGCACACGCTACATGGTAAATCGAGTGCAA
GACCACGTTCAAAGCCGTACAGCCTACTACCTCATGAACATCCATGTCACACCTCGATCTATCTACCTAT
GCCGACATGGTGAGAGTGAACTCAACCTTAGAGGCCGCATTGGAGGTGACTCTGGCCTCTCAGCTCGGGG
CAAGCAGTATGCCTATGCCCTGGCCAACTTCATTCGGTCTCAAAGCATCAGCTCCCTGAAGGTGTGGACT
AGCCACATGAAGAGGACCATTCAGACAGCTGAAGCCCTAGGCGTCCCCTATGAACAGTGGAAGGCCCTGA
ATGAGATTGATGCGGGTGTCTGTGAAGAGATGACTTATGAAGAAATTCAGGAACACTACCCTGAAGAATT
TGCACTACGGGACCAGGATAAATATCGTTACCGCTATCCCAAGGGAGAGTCCTATGAGGATCTGGTTCAG
CGTCTTGAGCCAGTTATAATGGAGCTAGAACGGCAAGAAAATGTACTGGTGATCTGTCACCAGGCTGTCA
TGCGGTGCCTTCTAGCATACTTCCTGGATAAAAGTTCAGATGAGCTGCCCTATCTCAAGTGTCCTCTGCA
TACAGTGCTCAAACTCACACCTGTGGCTTATGGCTGCAGAGTGGAGTCCATCTACCTGAATGTGGAGGCT
GTGAACACACACCGGGACAAGCCTGAGAATGTGGACATCACCCGTGAACCCGAGGAAGCCCTGGACACTG
TCCCTGCCCATTACTGA

Translation (448 aa):
MEEKASKRAASIPQFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVSYRNYEF
FRPDNMEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQFAKEHGYKVFFIESICND
PDIIAENIKQVKLGSPDYIDCDQEKVLEDFLKRIECYEINYQPLDEELDSHLSYIKIFDVGTRYMVNRVQ
DHVQSRTAYYLMNIHVTPRSIYLCRHGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQSISSLKVWT
SHMKRTIQTAEALGVPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDLVQ
RLEPVIMELERQENVLVICHQAVMRCLLAYFLDKSSDELPYLKCPLHTVLKLTPVAYGCRVESIYLNVEA
VNTHRDKPENVDITREPEEALDTVPAHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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