NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30460.1 Public Mus musculus X Il13ra2 23 108 98 CCDS HistoryNCBI Gene:16165Re-query CCDS DB by CCDS ID:30460.1Re-query CCDS DB by GeneID:16165See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033646.8 ENSMUSP00000033646.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033646.8Link to Ensembl Protein Viewer:ENSMUSP00000033646.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033646Re-query CCDS DB by Protein ID:ENSMUSP00000033646
Original member Current member EBI ENSMUST00000112827.1 ENSMUSP00000108446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112827.1Link to Ensembl Protein Viewer:ENSMUSP00000108446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112827Re-query CCDS DB by Protein ID:ENSMUSP00000108446
Original member Current member NCBI NM_008356.4 NP_032382.1 Accepted alive Link to Nucleotide Sequence:NM_008356.4Link to Protein Sequence:NP_032382.1Re-query CCDS DB by Nucleotide ID:NM_008356Re-query CCDS DB by Protein ID:NP_032382Link to BLAST:NP_032382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032382.1 383 O88786-1 383 100% 0 0

Chromosomal Locations for CCDS 30460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 147383621 147383677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147384444 147384559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147388214 147388358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147389663 147389808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147390839 147391023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147394323 147394443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147395012 147395165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147396097 147396248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 147397872 147397947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGCTTTTGTGCATATCAGATGCTTGTGTTTCATTCTTCTTTGTACAATAACTGGCTATTCTTTGGAGA
TAAAAGTTAATCCTCCTCAGGATTTTGAAATATTGGATCCTGGATTACTTGGTTATCTCTATTTGCAATG
GAAACCTCCTGTGGTTATAGAAAAATTTAAGGGCTGTACACTAGAATATGAGTTAAAATACCGAAATGTT
GATAGCGACAGCTGGAAGACTATAATTACTAGGAATCTAATTTACAAGGATGGGTTTGATCTTAATAAAG
GCATTGAAGGAAAGATACGTACGCATTTGTCAGAGCATTGTACAAATGGATCAGAAGTACAAAGTCCATG
GATAGAAGCTTCTTATGGGATATCAGATGAAGGAAGTTTGGAAACTAAAATTCAGGACATGAAGTGTATA
TATTATAACTGGCAGTATTTGGTCTGCTCTTGGAAACCTGGCAAGACAGTATATTCTGATACCAACTATA
CCATGTTTTTCTGGTATGAGGGCTTGGATCATGCCTTACAGTGTGCTGATTACCTCCAGCATGATGAAAA
AAATGTTGGATGCAAACTGTCCAACTTGGACTCATCAGACTATAAAGATTTTTTTATCTGTGTTAATGGA
TCTTCAAAGTTGGAACCCATCAGATCCAGCTATACAGTTTTTCAACTTCAAAATATAGTTAAACCATTGC
CACCAGAATTCCTTCATATTAGTGTGGAGAATTCCATTGATATTAGAATGAAATGGAGCACACCTGGAGG
ACCCATTCCACCAAGGTGTTACACTTATGAAATTGTGATCCGAGAAGACGATATTTCCTGGGAGTCTGCC
ACAGACAAAAACGATATGAAGTTGAAGAGGAGAGCAAATGAAAGTGAAGACCTATGCTTTTTTGTAAGAT
GTAAGGTCAATATATATTGTGCAGATGATGGAATTTGGAGCGAATGGAGTGAAGAGGAATGTTGGGAAGG
TTACACAGGGCCAGACTCAAAGATTATTTTCATAGTACCAGTTTGTCTTTTCTTTATATTCCTTTTGTTA
CTTCTTTGCCTTATTGTGGAGAAGGAAGAACCTGAACCCACATTGAGCCTCCATGTGGATCTGAACAAAG
AAGTGTGTGCTTATGAAGATACCCTCTGTTAA

Translation (383 aa):
MAFVHIRCLCFILLCTITGYSLEIKVNPPQDFEILDPGLLGYLYLQWKPPVVIEKFKGCTLEYELKYRNV
DSDSWKTIITRNLIYKDGFDLNKGIEGKIRTHLSEHCTNGSEVQSPWIEASYGISDEGSLETKIQDMKCI
YYNWQYLVCSWKPGKTVYSDTNYTMFFWYEGLDHALQCADYLQHDEKNVGCKLSNLDSSDYKDFFICVNG
SSKLEPIRSSYTVFQLQNIVKPLPPEFLHISVENSIDIRMKWSTPGGPIPPRCYTYEIVIREDDISWESA
TDKNDMKLKRRANESEDLCFFVRCKVNIYCADDGIWSEWSEEECWEGYTGPDSKIIFIVPVCLFFIFLLL
LLCLIVEKEEPEPTLSLHVDLNKEVCAYEDTLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH