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Report for CCDS30454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30454.1 Public Mus musculus X Pak3 23 108 98 CCDS HistoryNCBI Gene:18481Re-query CCDS DB by CCDS ID:30454.1Re-query CCDS DB by GeneID:18481See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112864.7 ENSMUSP00000108485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112864.7Link to Ensembl Protein Viewer:ENSMUSP00000108485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112864Re-query CCDS DB by Protein ID:ENSMUSP00000108485
Original member Current member EBI ENSMUST00000112865.7 ENSMUSP00000108486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112865.7Link to Ensembl Protein Viewer:ENSMUSP00000108486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112865Re-query CCDS DB by Protein ID:ENSMUSP00000108486
Original member Current member EBI ENSMUST00000112868.7 ENSMUSP00000108489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112868.7Link to Ensembl Protein Viewer:ENSMUSP00000108489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112868Re-query CCDS DB by Protein ID:ENSMUSP00000108489
Original member Current member EBI ENSMUST00000172330.2 ENSMUSP00000126562.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172330.2Link to Ensembl Protein Viewer:ENSMUSP00000126562.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172330Re-query CCDS DB by Protein ID:ENSMUSP00000126562
Original member Current member NCBI NM_001195049.1 NP_001181978.1 Accepted alive Link to Nucleotide Sequence:NM_001195049.1Link to Protein Sequence:NP_001181978.1Re-query CCDS DB by Nucleotide ID:NM_001195049Re-query CCDS DB by Protein ID:NP_001181978Link to BLAST:NP_001181978.1
Original member Current member NCBI NM_008778.3 NP_032804.2 Accepted alive Link to Nucleotide Sequence:NM_008778.3Link to Protein Sequence:NP_032804.2Re-query CCDS DB by Nucleotide ID:NM_008778Re-query CCDS DB by Protein ID:NP_032804Link to BLAST:NP_032804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181978.1 544 Q61036-2 544 100% 0 0
NP_032804.2 544 Q61036-2 544 100% 0 0

Chromosomal Locations for CCDS 30454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 143693314 143693488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143709648 143709748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143715136 143715289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143716111 143716148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143733072 143733203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143735257 143735422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143743938 143744001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143764962 143765010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143765268 143765380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143766794 143766911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143774362 143774461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143774938 143775134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143789310 143789447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143791235 143791324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGTCTGACAGCTTGGATAACGAAGAAAAACCCCCAGCTCCCCCACTGAGGATGAACAGTAACAACCGAG
ACTCTTCAGCACTCAACCACAGCTCCAAACCACTGCCCATGGCCCCGGAAGAGAAGAATAAGAAAGCCAG
GCTTCGCTCTATCTTCCCAGGAGGAGGGGATAAAACCAATAAGAAGAAAGAGAAAGAGCGCCCAGAGATC
TCTCTTCCTTCAGACTTTGAGCATACGATTCATGTGGGTTTTGATGCAGTCACCGGGGAATTCACTGGAA
TTCCTGAGCAATGGGCACGACTACTCCAAACCTCCAACATAACAAAGCTGGAACAGAAGAAGAACCCACA
AGCTGTTCTTGATGTTCTCAAGTTCTACGACTCCAAAGAAACGGTCAACAACCAGAAATATATGAGCTTT
ACGTCAGGAGATAAAAGTGCCCATGGATACATAGCAGCACATCAGTCGAATACCAAAACAGCTTCGGAAC
CTCCTTTGGCTCCTCCTGTATCTGAAGAAGAGGATGAAGAAGAGGAAGAGGAAGAAGATGACAATGAACC
TCCGCCTGTCATTGCACCAAGACCAGAGCATACAAAATCAATCTATACTCGCTCCGTGGTTGAGTCAATT
GCTTCACCAGCTGCACCAAATAAAGAAGATATCCCACCTTCTGCTGAGAATGCCAATTCCACCACTTTGT
ACAGGAATACAGATCGGCAAAGAAAAAAGTCCAAGATGACGGATGAGGAGATCCTAGAGAAGCTGAGAAG
CATTGTGAGTGTTGGGGACCCAAAGAAGAAATATACGAGATTTGAAAAAATTGGCCAAGGGGCATCAGGA
ACTGTTTACACAGCACTAGACATTGCGACTGGACAAGAGGTGGCCATAAAGCAAATGAACCTTCAACAGC
AGCCCAAAAAGGAATTAATTATTAATGAAATTCTTGTCATGAGGGAAAATAAGAACCCCAATATTGTCAA
TTATTTAGATAGCTACTTAGTGGGTGATGAACTGTGGGTAGTCATGGAATACTTGGCTGGTGGCTCTTTG
ACTGATGTGGTCACAGAAACCTGTATGGATGAAGGACAGATAGCAGCTGTCTGTAGAGAGTGCCTCCAAG
CTTTGGATTTCTTGCACTCAAACCAAGTGATCCACAGAGACATAAAGAGCGACAACATTCTCCTCGGGAT
GGATGGTTCTGTTAAACTGACTGATTTTGGGTTCTGTGCTCAAATCACTCCTGAGCAAAGTAAACGAAGC
ACTATGGTGGGAACTCCCTATTGGATGGCACCTGAAGTGGTAACTCGAAAAGCTTATGGTCCAAAAGTTG
ATATCTGGTCTCTGGGAATCATGGCCATTGAAATGGTGGAAGGTGAACCCCCTTACCTTAATGAAAATCC
ACTCAGGGCCTTATATCTGATAGCCACTAATGGGACCCCAGAGCTCCAGAATCCTGAGAGACTGTCAGCT
GTATTCCGTGACTTCTTAAATCGCTGTCTTGAGATGGATGTGGATAGAAGAGGATCTGCTAAGGAGCTTT
TGCAGCATCCGTTTTTAAAATTAGCCAAGCCTCTGTCTAGTCTCACTCCTCTGATTATCGCCGCAAAGGA
AGCAATTAAGAACAGTAGCCGTTAG

Translation (544 aa):
MSDSLDNEEKPPAPPLRMNSNNRDSSALNHSSKPLPMAPEEKNKKARLRSIFPGGGDKTNKKKEKERPEI
SLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSKETVNNQKYMSF
TSGDKSAHGYIAAHQSNTKTASEPPLAPPVSEEEDEEEEEEEDDNEPPPVIAPRPEHTKSIYTRSVVESI
ASPAAPNKEDIPPSAENANSTTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASG
TVYTALDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL
TDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS
TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSA
VFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLSSLTPLIIAAKEAIKNSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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