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Report for CCDS30432.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30432.2 Public Mus musculus X Pwwp3b 23 108 98 CCDS HistoryNCBI Gene:245631Re-query CCDS DB by CCDS ID:30432.2Re-query CCDS DB by GeneID:245631See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 30432.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30432.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113041.8 ENSMUSP00000108664.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113041.8Link to Ensembl Protein Viewer:ENSMUSP00000108664.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113041Re-query CCDS DB by Protein ID:ENSMUSP00000108664
Original member Current member EBI ENSMUST00000113042.2 ENSMUSP00000108665.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113042.2Link to Ensembl Protein Viewer:ENSMUSP00000108665.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113042Re-query CCDS DB by Protein ID:ENSMUSP00000108665
Original member Current member EBI ENSMUST00000113043.7 ENSMUSP00000108666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113043.7Link to Ensembl Protein Viewer:ENSMUSP00000108666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113043Re-query CCDS DB by Protein ID:ENSMUSP00000108666
Original member Current member EBI ENSMUST00000113045.8 ENSMUSP00000108668.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113045.8Link to Ensembl Protein Viewer:ENSMUSP00000108668.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113045Re-query CCDS DB by Protein ID:ENSMUSP00000108668
Original member Current member NCBI NM_001164630.1 NP_001158102.1 Accepted alive Link to Nucleotide Sequence:NM_001164630.1Link to Protein Sequence:NP_001158102.1Re-query CCDS DB by Nucleotide ID:NM_001164630Re-query CCDS DB by Protein ID:NP_001158102Link to BLAST:NP_001158102.1
Original member Current member NCBI NM_001164631.1 NP_001158103.1 Accepted alive Link to Nucleotide Sequence:NM_001164631.1Link to Protein Sequence:NP_001158103.1Re-query CCDS DB by Nucleotide ID:NM_001164631Re-query CCDS DB by Protein ID:NP_001158103Link to BLAST:NP_001158103.1
Original member Current member NCBI NM_001164632.1 NP_001158104.1 Accepted alive Link to Nucleotide Sequence:NM_001164632.1Link to Protein Sequence:NP_001158104.1Re-query CCDS DB by Nucleotide ID:NM_001164632Re-query CCDS DB by Protein ID:NP_001158104Link to BLAST:NP_001158104.1
Original member Current member NCBI NM_001164633.1 NP_001158105.1 Accepted alive Link to Nucleotide Sequence:NM_001164633.1Link to Protein Sequence:NP_001158105.1Re-query CCDS DB by Nucleotide ID:NM_001164633Re-query CCDS DB by Protein ID:NP_001158105Link to BLAST:NP_001158105.1
Original member Current member NCBI NM_175541.3 NP_780750.2 Accepted alive Link to Nucleotide Sequence:NM_175541.3Link to Protein Sequence:NP_780750.2Re-query CCDS DB by Nucleotide ID:NM_175541Re-query CCDS DB by Protein ID:NP_780750Link to BLAST:NP_780750.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158102.1 681 Q4VA55 681 100% 0 0
NP_001158103.1 681 Q4VA55 681 100% 0 0
NP_001158104.1 681 Q4VA55 681 100% 0 0
NP_001158105.1 681 Q4VA55 681 100% 0 0
NP_780750.2 681 Q4VA55 681 100% 0 0

Chromosomal Locations for CCDS 30432.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139234715 139236760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGATGGCAAATATGTCCTGTGTAATTGGAAAGACCAATTATGGCCAGCAAAAGTTTTAGATAGGTCTG
AAAGTCCATCAGAGAGTAAGAGGAAAAATACATCGTCCCTAGAAGTTGAAATACTTTCACTGGATGAGAA
AATTACCGTGGAAAGCACAGACACAAAAGTCCTAAGCAAATCTGCTGTTGAAGCCATTATGTCCTCTCTA
GCAGTACAGTCAGAGGTCATCATTGCACCTAGAGAGGAGACAGCCTATGAAAGATCACTGAAAATGGCAC
TGGAAATGGTGAAAGAAGGAACCAATCTCAGCCAGGAAAGCATGTCAGAAGAACAACCTACAGCTACAGC
GTCTGAAAATGTGCCAGAACAGCCACCTGATTCACCTCCTCATAAAAAGTTCCGCAAACTTGAAAGCAAC
ACCCAGGAGGACTCTGCTTCCATACTGCTGTGCTCAGAGAGTGATGATTCCATGACCGATGATAAGTTGC
AGGTGCACACAACCGGTGAGAGCATGCCAAGTGAGATGGACACAAAGGCAACAGAAAACTTAGGCTGTTG
CCAAACAGACCCTTCCTTGGCAGATGAGGATGATAAAAAGGAAGAAAAGAAAAAGATTGACATCTCGGCA
ATCATGTCTGTGAATTTATCACTCAAAGAAGAAAGCGAATATATTAAAGAAGAGAAATTCGTCCCCTCAT
CAGAAGATCTCACTGTCCCCAAAGAGGAGTCACAAGACATCCTCCCAGAAGCGCCTCTGGCTGTTTCCTC
TGAATGTTCTATTGTCTCAGAGAATAACATGGAAGATCCTGGTGAGGGCCCATCAAATCAGAATCTAGTC
TCCTATGCCAACCAAAATCAGTCTTCTGTGGAATCCGATGTAGGTGCCGAGACATCCACTGCAGGGTGCT
CAGGGGACTTTCAGGTTTCCCTTCCTACCCGTGATACAGTCAGCAGTGATCTACTGCTCCAGAGACTGGA
TCTAGAAGATCTTGAGGAAGAAGCCCGAGCTTCAGGCAAGCTTTTGTCTTTAAATCCTGCCAGTGCCGCT
GCGTTAGAAAATGATAATGAAGATGATGATGAAGACCTTCCACGTTTCATCCTCCATTATGAGACACGTG
CATTTGAAACTGGAATGATAGTGTGGTTTAAATATCAAAAATACCCATTTTGGCCAGCAGTGATCAAAAG
CATTAGGCGGAAAGAGAGGAAAGCGAGTGTGCTTTTGGTTGAGGCAGACATGAGTCCTCAAAAGAAAGGC
GTTAGAGTATCTTTGAGGAGGCTGAAGAAATACGACTGTAAAGAGAAACAGGCACTAGTGGAGAAAGCCA
GGGAGGAGTACCGGGAGAGTATCGATTGGTGCGTGTCACTGATTTGTGACTACCGAGTTAGACTAGGTTG
TGGCTCTTTTACCGGCTCGTTCTTTGAGTATTATGCTGCTGACATCAGTTATCCAGTCAGGAAAATCATC
AAACAAGATACCTTCAGAAATATATTTCCAAAGCTATACAATGAAAACGTGGGGGAGCAGTTGCCTATGG
CATCCCAAGCCAAGAGAGTATCTTTCCAGAAAATTCTCCCTGATCGGATGAAGCCTGCTCGGGACCGAGC
TAACAAGAACCTGGTAGATTTTATTGTCAATGCAAAAGGAACAGAGGACCACCTCTTGGGCATTTTAAAG
GGCACCAAAAAATCCAAGTGGCTGAAATCATTTCTCAATGCAAAGAGTTTCACACCCTGTATTGAAACCT
ACTTTGAAGATGAAGATCAACTGGATGAGGTAGTGAAATACCTACAAGAAATTTATAAGCAAATTGACCA
GAAGATGCTGACTCTGATAAAAGATGACAAAATTAAGTTTGTCTTGGAAGTTCTTCTACCAGAAGCAATT
ATTTGCTCAATTTCTGCTGTTGATGGCTTAGATTATGAGGCAGCTGAGGCAAAGTATCTAAAGGGACCAT
CCCTCGGCTGTAGGGAGAGAGAATTATATGATTCCAAAATCCTATTTGAAAAGAGAAGGAGGTCATTACC
AAACGAAGGCCATTAA

Translation (681 aa):
MDGKYVLCNWKDQLWPAKVLDRSESPSESKRKNTSSLEVEILSLDEKITVESTDTKVLSKSAVEAIMSSL
AVQSEVIIAPREETAYERSLKMALEMVKEGTNLSQESMSEEQPTATASENVPEQPPDSPPHKKFRKLESN
TQEDSASILLCSESDDSMTDDKLQVHTTGESMPSEMDTKATENLGCCQTDPSLADEDDKKEEKKKIDISA
IMSVNLSLKEESEYIKEEKFVPSSEDLTVPKEESQDILPEAPLAVSSECSIVSENNMEDPGEGPSNQNLV
SYANQNQSSVESDVGAETSTAGCSGDFQVSLPTRDTVSSDLLLQRLDLEDLEEEARASGKLLSLNPASAA
ALENDNEDDDEDLPRFILHYETRAFETGMIVWFKYQKYPFWPAVIKSIRRKERKASVLLVEADMSPQKKG
VRVSLRRLKKYDCKEKQALVEKAREEYRESIDWCVSLICDYRVRLGCGSFTGSFFEYYAADISYPVRKII
KQDTFRNIFPKLYNENVGEQLPMASQAKRVSFQKILPDRMKPARDRANKNLVDFIVNAKGTEDHLLGILK
GTKKSKWLKSFLNAKSFTPCIETYFEDEDQLDEVVKYLQEIYKQIDQKMLTLIKDDKIKFVLEVLLPEAI
ICSISAVDGLDYEAAEAKYLKGPSLGCRERELYDSKILFEKRRRSLPNEGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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