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Report for CCDS30427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30427.1 Public Mus musculus X Zcchc18 23 108 98 CCDS HistoryNCBI Gene:66995Re-query CCDS DB by CCDS ID:30427.1Re-query CCDS DB by GeneID:66995See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033804.4 ENSMUSP00000033804.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033804.4Link to Ensembl Protein Viewer:ENSMUSP00000033804.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033804Re-query CCDS DB by Protein ID:ENSMUSP00000033804
Original member Current member EBI ENSMUST00000101227.2 ENSMUSP00000098788.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101227.2Link to Ensembl Protein Viewer:ENSMUSP00000098788.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101227Re-query CCDS DB by Protein ID:ENSMUSP00000098788
Original member Current member EBI ENSMUST00000113067.7 ENSMUSP00000108690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113067.7Link to Ensembl Protein Viewer:ENSMUSP00000108690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113067Re-query CCDS DB by Protein ID:ENSMUSP00000108690
Original member Current member NCBI NM_001035509.2 NP_001030586.1 Accepted alive Link to Nucleotide Sequence:NM_001035509.2Link to Protein Sequence:NP_001030586.1Re-query CCDS DB by Nucleotide ID:NM_001035509Re-query CCDS DB by Protein ID:NP_001030586Link to BLAST:NP_001030586.1
Original member Current member NCBI NM_001035510.2 NP_001030587.1 Accepted alive Link to Nucleotide Sequence:NM_001035510.2Link to Protein Sequence:NP_001030587.1Re-query CCDS DB by Nucleotide ID:NM_001035510Re-query CCDS DB by Protein ID:NP_001030587Link to BLAST:NP_001030587.1
Original member Current member NCBI NM_001358437.1 NP_001345366.1 Accepted alive Link to Nucleotide Sequence:NM_001358437.1Link to Protein Sequence:NP_001345366.1Re-query CCDS DB by Nucleotide ID:NM_001358437Re-query CCDS DB by Protein ID:NP_001345366Link to BLAST:NP_001345366.1
Original member Current member NCBI NM_001358439.1 NP_001345368.1 Accepted alive Link to Nucleotide Sequence:NM_001358439.1Link to Protein Sequence:NP_001345368.1Re-query CCDS DB by Nucleotide ID:NM_001358439Re-query CCDS DB by Protein ID:NP_001345368Link to BLAST:NP_001345368.1
Original member Current member NCBI NM_001358440.1 NP_001345369.1 Accepted alive Link to Nucleotide Sequence:NM_001358440.1Link to Protein Sequence:NP_001345369.1Re-query CCDS DB by Nucleotide ID:NM_001358440Re-query CCDS DB by Protein ID:NP_001345369Link to BLAST:NP_001345369.1
Original member Current member NCBI NM_001358441.1 NP_001345370.1 Accepted alive Link to Nucleotide Sequence:NM_001358441.1Link to Protein Sequence:NP_001345370.1Re-query CCDS DB by Nucleotide ID:NM_001358441Re-query CCDS DB by Protein ID:NP_001345370Link to BLAST:NP_001345370.1
Original member Current member NCBI NM_025893.3 NP_080169.2 Accepted alive Link to Nucleotide Sequence:NM_025893.3Link to Protein Sequence:NP_080169.2Re-query CCDS DB by Nucleotide ID:NM_025893Re-query CCDS DB by Protein ID:NP_080169Link to BLAST:NP_080169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030586.1 393 Q8VD24 393 100% 0 0
NP_001030587.1 393 Q8VD24 393 100% 0 0
NP_001345366.1 393 Q8VD24 393 100% 0 0
NP_001345368.1 393 Q8VD24 393 100% 0 0
NP_001345369.1 393 Q8VD24 393 100% 0 0
NP_001345370.1 393 Q8VD24 393 100% 0 0
NP_080169.2 393 Q8VD24 393 100% 0 0

Chromosomal Locations for CCDS 30427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136994638 136995819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCTAGCCTCCTTGCTAGGATGGGTAACAGTCGCCGGCAGAATGCAGCTTTTATGCCTTTTGCCCATT
CCATGCTGAGGGCCCTGGGGAGGAGCCTTGGTCCTTTGATTGCCAACATTGCAGAGAGAAACATACAGTC
GTTCTCTGGGAGGGCAGAGCTAGGACCCGGGGAAGAAACCTTTGAAAACTGGCTAAGCCAAGTCCATGAG
GTCCTGCCAGATTGGCCTATGTCTGAAGAAGAAAAGATCAAGCGCCTGATGAGAACCCTTAGGGGCCCTG
CCCGGGAGGCCATGCGTTTGTTCCAGGCTGACAATCCCAATCTAAATGTCGCAGAATTTTTGCGGGCAAT
GAAGCTGCTCTTTGGAGCGTCTGAGAGCAGTATAACAGCGCATGGCAAATTTTTAAGCACCCTGCAGGCA
CAGGGAGAGAAACCATCCCTGTATGTGATCCGTTTAGAGGTGCAGCTACAGAATGCTATCCAGGCAGGGG
TCCTTCCTCAGAGCGAGGCAAACAGGACTCGCCTGCACCAGCTCCTTGTAGGGGCTGAGCTGAGTAGGGA
GCTGCGCACCAAGCTTAAGGGGCTTCTCCAAATGCATGCGCATAATGAGCAGGAAAACCTTCCTGACTTC
CTGGAGTTGATCAGGATGATAAGGGAGGAAGAGGATTGGGATGAGACATTCCTTAGAAATAAGCGGCCCA
GAAGATCTGAGACAGTGATGGAGCGGGCAGCCAGCCCTGTGGTCTTTCAAGGCTCCCTGCCTATAGTGAT
AGGCAGTGCCGACTGTAATGTGATAGAGATAGATGATTCCCAGGATGATTCAGATGAAGATGTGATCCTG
GTGGAGCCCGAGGACCCTCCACTCTCATCCCCAGGTGCCTCATCCCTCCGAGGCACAGCCAGTACTCAGG
AAGAGATGCTGATTATTGAGTCCCCTGATGATTTTGATGAGGAGTCTCCTTCCACTAGCAGTGGTTCTGG
GCAAAGGAATAACGGGCCTGGGGATCTAGGTAGAACCAGAAAGCGCAAGTACCCAATCCGCTGTCCTCAT
TGTGGTGAAGAGGGCCACGCCAAAGAAACCTGTGACAATACCAGCAACAAGGGCCAGGTTTTTGAGAATT
TGATAGTCACTCTGCAGGAGCTGACTCACATGGAGAGACCCAAACCCTCTGTACCATACTAA

Translation (393 aa):
MASLLARMGNSRRQNAAFMPFAHSMLRALGRSLGPLIANIAERNIQSFSGRAELGPGEETFENWLSQVHE
VLPDWPMSEEEKIKRLMRTLRGPAREAMRLFQADNPNLNVAEFLRAMKLLFGASESSITAHGKFLSTLQA
QGEKPSLYVIRLEVQLQNAIQAGVLPQSEANRTRLHQLLVGAELSRELRTKLKGLLQMHAHNEQENLPDF
LELIRMIREEEDWDETFLRNKRPRRSETVMERAASPVVFQGSLPIVIGSADCNVIEIDDSQDDSDEDVIL
VEPEDPPLSSPGASSLRGTASTQEEMLIIESPDDFDEESPSTSSGSGQRNNGPGDLGRTRKRKYPIRCPH
CGEEGHAKETCDNTSNKGQVFENLIVTLQELTHMERPKPSVPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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