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Report for CCDS30332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30332.1 Public Mus musculus X Zdhhc15 23 108 98 CCDS HistoryNCBI Gene:108672Re-query CCDS DB by CCDS ID:30332.1Re-query CCDS DB by GeneID:108672See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042070.5 ENSMUSP00000047615.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042070.5Link to Ensembl Protein Viewer:ENSMUSP00000047615.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042070Re-query CCDS DB by Protein ID:ENSMUSP00000047615
Original member Current member NCBI NM_175358.4 NP_780567.1 Accepted alive Link to Nucleotide Sequence:NM_175358.4Link to Protein Sequence:NP_780567.1Re-query CCDS DB by Nucleotide ID:NM_175358Re-query CCDS DB by Protein ID:NP_780567Link to BLAST:NP_780567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780567.1 337 Q8BGJ0 337 100% 0 0

Chromosomal Locations for CCDS 30332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 104544858 104544904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104560685 104560788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104563821 104563947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104565702 104565834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104571654 104571774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104572505 104572537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104574169 104574238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104588301 104588421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104598092 104598186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104632584 104632610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104670664 104670799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGCGGCGGGGCTGGAAGATGGCTCTGTCTGGGGGGTTGCGGTGCTGCCGCCGGGTACTGTCCTGGGTGC
CAGTGCTCGTTATTGTCCTCGTCGTTCTCTGGTCCTACTATGCCTACGTCTTTGAACTCTGCCTGGTGAC
TGTTTTGAGTCCAGCGGAAAAAGTTATCTACCTCATACTCTATCATGCCATTTTTGTGTTCTTTGCATGG
ACCTACTGGAAGTCTATCTTCACACTCCCACAGCAGCCAAACCAGAAGTTCCACTTGTCCTATACAGACA
AGGAGCGCTATAAAAATGAAGAGAGACCTGAGGTCCAGAAGCAGATGCTTGTGGACATGGCCAAGAAGTT
ACCAGTGTACACAAGAACCGGGAGTGGAGCTGTACGGTTCTGTGACCGGTGCCATCTAATCAAGCCAGAC
CGCTGCCATCACTGTTCTGTCTGTGCCATGTGTGTTTTAAAAATGGACCATCACTGCCCATGGGTTAATA
ACTGCATTGGATTTTCCAACTACAAATTCTTCCTTCAGTTCTTAGCTTATTCCGTTCTCTACTGCCTGTA
CATTGCTACAACAGTCTTCAGCTACTTCATCAAATACTGGAGAGGGGAATTGCCCAGTGTTCGCTCTAAG
TTCCATGTCCTCTTTCTCCTCTTTGTGGCCTGCATGTTTTTTGTCAGCCTTGTGATTCTCTTTGGTTACC
ATTGTTGGCTTGTCAGCAGAAACAAAACTACCTTAGAGGCCTTCTGCACACCAGTATTCACAAGTGGACC
AGAGAAAAATGGGTTCAATCTTGGCTTCATCAAGAATATTCAGCAGGTGTTTGGCGATAATAAGAAGTTC
TGGTTAATACCCATTGGGTCCAGCCCTGGTGATGGACACTCCTTCCCTATGAGGTCTATGAATGAGTCAC
AGAACCCGCTGCTGGCAAATGAGGAACCCTGGGAAGACAATGAGGATGATAGTCGAGATTATCCAGAAGG
CTCATCATCACTTGCTGTGGAGTCGGAAACGTAG

Translation (337 aa):
MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVTVLSPAEKVIYLILYHAIFVFFAW
TYWKSIFTLPQQPNQKFHLSYTDKERYKNEERPEVQKQMLVDMAKKLPVYTRTGSGAVRFCDRCHLIKPD
RCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFFLQFLAYSVLYCLYIATTVFSYFIKYWRGELPSVRSK
FHVLFLLFVACMFFVSLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKNGFNLGFIKNIQQVFGDNKKF
WLIPIGSSPGDGHSFPMRSMNESQNPLLANEEPWEDNEDDSRDYPEGSSSLAVESET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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