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Report for CCDS30155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30155.1 Public Mus musculus X Zic3 23 108 98 CCDS HistoryNCBI Gene:22773Re-query CCDS DB by CCDS ID:30155.1Re-query CCDS DB by GeneID:22773See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30155.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088627.10 ENSMUSP00000085999.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088627.10Link to Ensembl Protein Viewer:ENSMUSP00000085999.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088627Re-query CCDS DB by Protein ID:ENSMUSP00000085999
Original member Current member NCBI NM_009575.2 NP_033601.2 Accepted alive Link to Nucleotide Sequence:NM_009575.2Link to Protein Sequence:NP_033601.2Re-query CCDS DB by Nucleotide ID:NM_009575Re-query CCDS DB by Protein ID:NP_033601Link to BLAST:NP_033601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033601.2 466 Q62521-1 466 100% 0 0

Chromosomal Locations for CCDS 30155.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 58031181 58032237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 58033362 58033525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 58034370 58034549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGACGATGCTCCTGGACGGAGGCCCGCAGTTCCCTGGGTTGGGAGTGGGCAGCTTCGGTGCTCCGCGCC
ACCACGAGATGCCCAACCGCGAGCCTGCAGGCATGGGATTGAATCCCTTCGGGGACTCAACCCACGCTGC
GGCCGCCGCCGCTGCCGCCGCTGCCTTCAAGCTGAGCCCAGCCACCGCTCACGATCTGTCTTCGGGCCAG
AGCTCAGCGTTCACACCGCAGGGTTCAGGTTATGCCAATGCCCTGGGCCACCATCACCACCACCATCACC
ACCATCACGCCAGCCAGGTGCCCACCTACGGCGGCGCTGCCTCCGCCGCTTTCAACTCCACGCGCGACTT
TCTGTTCCGTCAGCGCGGTTCTGGGCTCAGCGAGGCAGCCTCCGGGGGCGGGCAGCACGGGCTTTTCGCT
GGCTCGGCGAGCAGTCTTCACGCTCCAGCTGGTATTCCTGAGCCTCCTAGCTACTTGCTCTTTCCTGGGC
TTCATGAGCAGGGCGCTGGGCACCCGTCGCCCACAGGGCACGTGGACAACAACCAGGTCCATCTGGGGCT
GCGCGGGGAGCTATTTGGCCGTGCAGACCCATACCGCCCCGTGGCTAGCCCGCGCACGGACCCCTACGCG
GCCAGTGCGCAGTTCCCTAACTATAGCCCCATGAACATGAACATGGGCGTGAACGTGGCGGCCCACCACG
GGCCGGGCGCCTTCTTCCGTTACATGCGGCAGCCCATCAAGCAGGAGCTGTCCTGTAAGTGGATCGAGGA
GGCTCAGCTGAGCCGGCCCAAGAAGAGCTGCGACCGGACCTTCAGCACCATGCATGAGTTGGTTACGCAT
GTTACCATGGAGCATGTGGGGGGCCCGGAGCAGAACAACCACGTCTGCTATTGGGAGGAATGTCCCCGCG
AAGGCAAGTCCTTCAAGGCGAAGTACAAACTGGTCAACCATATCCGAGTGCACACTGGCGAGAAACCCTT
CCCGTGTCCCTTCCCGGGCTGCGGGAAGATTTTTGCCCGCTCTGAGAACCTCAAGATCCACAAGAGGACC
CATACAGGTGAGAAACCTTTCAAATGTGAATTCGAAGGCTGTGACAGACGGTTTGCCAACAGCAGCGACC
GCAAGAAGCACATGCATGTGCACACCTCGGACAAGCCCTATATCTGTAAAGTGTGCGACAAGTCCTACAC
ACACCCGAGCTCCCTGCGCAAACACATGAAGGTTCATGAATCTCAAGGGTCAGATTCCTCCCCTGCTGCC
AGTTCAGGCTATGAATCTTCCACTCCACCCGCTATAGCTTCTGCAAACAGTAAAGATACCACTAAAACCC
CTTCTGCAGTTCAAACTAGCACCAGCCACAACCCTGGACTTCCTCCCAATTTTAACGAATGGTACGTCTG
A

Translation (466 aa):
MTMLLDGGPQFPGLGVGSFGAPRHHEMPNREPAGMGLNPFGDSTHAAAAAAAAAAFKLSPATAHDLSSGQ
SSAFTPQGSGYANALGHHHHHHHHHHASQVPTYGGAASAAFNSTRDFLFRQRGSGLSEAASGGGQHGLFA
GSASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGHVDNNQVHLGLRGELFGRADPYRPVASPRTDPYA
ASAQFPNYSPMNMNMGVNVAAHHGPGAFFRYMRQPIKQELSCKWIEEAQLSRPKKSCDRTFSTMHELVTH
VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT
HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYICKVCDKSYTHPSSLRKHMKVHESQGSDSSPAA
SSGYESSTPPAIASANSKDTTKTPSAVQTSTSHNPGLPPNFNEWYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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