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Report for CCDS29953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29953.1 Public Mus musculus X Mycs 23 108 98 CCDS HistoryNCBI Gene:17870Re-query CCDS DB by CCDS ID:29953.1Re-query CCDS DB by GeneID:17870See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058404.4 ENSMUSP00000054158.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058404.4Link to Ensembl Protein Viewer:ENSMUSP00000054158.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058404Re-query CCDS DB by Protein ID:ENSMUSP00000054158
Original member Current member NCBI NM_010850.2 NP_034980.2 Accepted alive Link to Nucleotide Sequence:NM_010850.2Link to Protein Sequence:NP_034980.2Re-query CCDS DB by Nucleotide ID:NM_010850Re-query CCDS DB by Protein ID:NP_034980Link to BLAST:NP_034980.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034980.2 431 Q9Z304 431 100% 0 0

Chromosomal Locations for CCDS 29953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 5467729 5469024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCTCAGCTGCACTACATCCACCATGCCCGGAATGATCTGCAAGAACTCAGACCTGGAGTTTGACTTGC
TGAAACCCTGCTTCTACCCGGAAGAAGATGACATCTACTTTGGTGGTCACAACTCGACGCCTCCAGGGGA
GGACATCTGGAAGAAGTTTGAACTGTTGCCCACCCCGCGATTGTCACCTGACAGTGCCTTGGCAGAGCAC
AGCCTGGAGCCGGTGAACTGGGCCACGGAGATGCTGCTGCCTGAGGCCGACCTATGGAGTAACCCGGGCG
AGGAGGAGGTTTTCGGCCAGGGAGGACTCCGCGGCTGCACCAGCAACCCGATCATCCTTCAGGACTGCAT
GTGGAGCGGCTTCTCCAACCCGGGGAAGCCAGAAAGTGTGGTGAGCGAGAAGCTGCCAGGGGGCTACCGG
TCCCTCGCCGTCGGCGCAGGCACCTTGGCCCCCGGAGCGGCAGCTGCCGCCAGCTCTGCTGGCCATGAGC
GCAGTGGGACAGCAGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACCTGGACTTGGA
GTGTGTGGACCCTGCTGTGGTCTTCTTCCCAGCGAATAAGCGCGAGCCTATGCCTGTACCCACCATCCCC
ACCAGCACCGGCTCAGCGATAAGCCTTGGTGACCACCAGGGGCTCAGCAGTTCCCTAGAGGACTTCCTAA
GCAACTCAGGTTCTGTAGAGGAAGGCGGAGAGGAAATCTATGTGGTCATGCTGGAGGAGACACAGTTCTC
CAAGACTGTCTCCAGGCTCCCCACCGCGGCGCATCAGGAGAACGCAGCGCTGAGTCCCGGGTGCGCGCAG
TCCAGCGAGCTGATCCTTAAGCGCTACGACCTCATTCAGGAGCAACACAACTATGCCGCGCCACCGTTGC
CCTACGTGGACAGGGAGGACGCACGGCCTCAGAAGAAGCCCAGGAGCCACACTTCGCTAGCCCTCAAATG
CGTCTTCCGGCCAAAGGCTCCGAGGTTGGGATCCCGGAACAACTCAGACTGGGAGAACATCGAGCGTCGC
CGCAACCACAACAGGATGGAGCGCCAACGCCGTGACATTATGCGCTCCAGTTTCCTGAACCTCAGGGATC
TTGTGCCTGAGCTGGTGCACAATGAGAAGGCCGCTAAGGTGGTCATCCTGAAAAAAGCCACTGAGTACAT
CCACACTCTGCAGGCTGATGAGTCCAAGCTCCTGGTGGAAAGGAAGAAACTGTATGAAAGACAACAGCAG
TTGCTACAGAAAATCAAACAATATGCTCTGTGCTAA

Translation (431 aa):
MLSCTTSTMPGMICKNSDLEFDLLKPCFYPEEDDIYFGGHNSTPPGEDIWKKFELLPTPRLSPDSALAEH
SLEPVNWATEMLLPEADLWSNPGEEEVFGQGGLRGCTSNPIILQDCMWSGFSNPGKPESVVSEKLPGGYR
SLAVGAGTLAPGAAAAASSAGHERSGTAGVGRGKAAWLTELSHLDLECVDPAVVFFPANKREPMPVPTIP
TSTGSAISLGDHQGLSSSLEDFLSNSGSVEEGGEEIYVVMLEETQFSKTVSRLPTAAHQENAALSPGCAQ
SSELILKRYDLIQEQHNYAAPPLPYVDREDARPQKKPRSHTSLALKCVFRPKAPRLGSRNNSDWENIERR
RNHNRMERQRRDIMRSSFLNLRDLVPELVHNEKAAKVVILKKATEYIHTLQADESKLLVERKKLYERQQQ
LLQKIKQYALC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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