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Report for CCDS29890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29890.1 Public Mus musculus 19 Neurl1a 23 108 98 CCDS HistoryNCBI Gene:18011Re-query CCDS DB by CCDS ID:29890.1Re-query CCDS DB by GeneID:18011See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111808.10 ENSMUSP00000107439.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111808.10Link to Ensembl Protein Viewer:ENSMUSP00000107439.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111808Re-query CCDS DB by Protein ID:ENSMUSP00000107439
Original member Current member NCBI NM_021360.4 NP_067335.4 Accepted alive Link to Nucleotide Sequence:NM_021360.4Link to Protein Sequence:NP_067335.4Re-query CCDS DB by Nucleotide ID:NM_021360Re-query CCDS DB by Protein ID:NP_067335Link to BLAST:NP_067335.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067335.4 574 Q923S6-1 574 100% 0 0

Chromosomal Locations for CCDS 29890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47179467 47179551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47239802 47240043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47240350 47240671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47253119 47253808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47256712 47256858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47257417 47257655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGGTAACAACTTCTCCAGTGTCTCCTCTCTGCAGCGAGGAAACCCGAGCCGCGCGTCGCGGGGCCACC
CCCAGAACCTCAAAGACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAA
GCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAG
GGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCA
CCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAGATCACCAAGAAGCAATGCTGCTG
GAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAG
TACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACG
AGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGC
TATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACG
CGGGGTGTCCAGCTGCTAGACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCCTTCACCGCGC
TGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGT
GCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCT
CAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGC
ACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTT
CACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCG
GGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCC
CCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGA
CATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATG
CAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCC
GCATCCTCGGCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCC
AACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTA
GGTGGCTCTGCTGGAGGGACAGCCCCCAACTCACCTGTGAGCCTGCCCGAGTCACCGGTGACCCCAGGTC
TGGGCCAGTGGAGTGATGAATGCACCATTTGCTATGAACACGCAGTGGACACAGTCATCTACACGTGTGG
CCACATGTGCCTGTGCTACTCCTGTGGCCTGCGCCTCAAGAAGGCCCTGCACGCCTGCTGCCCCATCTGC
CGTCGCCCCATCAAGGACATCATCAAGACCTACCGCAGCTCCTAG

Translation (574 aa):
MGNNFSSVSSLQRGNPSRASRGHPQNLKDSIGGSFPVPSHRCHHKQKHCPPTLSGGGLPATPLLFHPHTK
GSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPDSLPK
YACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFYRINESAAMLFFSGVRTVDPLWALVDVYGLT
RGVQLLDSELVLPDCLRPRSFTALRRPSLRCEADEARLSVSLCDLNVPGADGDDGAPPAGCPIPQNSLNS
QHSRALPAQLDGDLRFHALRAGAHVRILDEQTVARLEHGRDERALVFTSRPVRVAETIFIKVTRSGGGRA
GALSFGVTTCDPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGM
QLCVDASQPLWMLFSLHGAITQVRILGSTIMTERGGPSLPCSPASTPTSPSALGIRLSDPLLSTCGSGPL
GGSAGGTAPNSPVSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPIC
RRPIKDIIKTYRSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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