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Report for CCDS29837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29837.1 Public Mus musculus 19 Cutc 23 108 98 CCDS HistoryNCBI Gene:66388Re-query CCDS DB by CCDS ID:29837.1Re-query CCDS DB by GeneID:66388See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026199.13 ENSMUSP00000026199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026199.13Link to Ensembl Protein Viewer:ENSMUSP00000026199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026199Re-query CCDS DB by Protein ID:ENSMUSP00000026199
Original member Current member NCBI NM_025530.3 NP_079806.2 Accepted alive Link to Nucleotide Sequence:NM_025530.3Link to Protein Sequence:NP_079806.2Re-query CCDS DB by Nucleotide ID:NM_025530Re-query CCDS DB by Protein ID:NP_079806Link to BLAST:NP_079806.2

Chromosomal Locations for CCDS 29837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43753163 43753220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43755620 43755691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43758728 43758787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43759850 43760059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43760689 43760724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43762903 43763006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43764960 43764987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43767201 43767306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43768175 43768289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGAAGAAAGGGGCTTCTTGCGAGCGGAAACAGGCGTGGATATCGTCGGGGAAGGCGGGAGCAGGAAATG
GATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCTGGTCG
GATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGGGTGTTCTTCAAGTAGTAAAA
CAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTG
AAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGC
ATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAGCTCTTTGCCGCCCTCTGCCG
GTCACTTTCCACAGAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCG
ACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGT
AATGCCAGGAGGTGGAATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGTTCCGGTGCTACAGAATTC
CACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTT
CGCTTGCTCATTCAGAATATTCTCTAAAGGTAACAGATGTGACAAAAGTAAGGACTTTGAATGCAATTGC
AAAGGACGTCCTAGTTTAG

Translation (262 aa):
MKKGASCERKQAWISSGKAGAGNGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVK
QSVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCLSLVALCRPLP
VTFHRALETLLTLGFERVLTSGCDSSALEGLPLIKQLIDQAKGRIVVMPGGGITDKNLQRILEGSGATEF
HCSARSSRDSGMKFRNSSVAMGASLAHSEYSLKVTDVTKVRTLNAIAKDVLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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