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Report for CCDS29794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29794.1 Public Mus musculus 19 Cyp2c38 23 108 98 CCDS HistoryNCBI Gene:13097Re-query CCDS DB by CCDS ID:29794.1Re-query CCDS DB by GeneID:13097See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035488.2 ENSMUSP00000044722.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035488.2Link to Ensembl Protein Viewer:ENSMUSP00000044722.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035488Re-query CCDS DB by Protein ID:ENSMUSP00000044722
Original member NCBI NM_010002.3 NP_034132.2 Updated not alive Link to Nucleotide Sequence:NM_010002.3Link to Protein Sequence:NP_034132.2Re-query CCDS DB by Nucleotide ID:NM_010002Re-query CCDS DB by Protein ID:NP_034132
Current member NCBI NM_010002.4 NP_034132.2 Accepted alive Link to Nucleotide Sequence:NM_010002.4Link to Protein Sequence:NP_034132.2Re-query CCDS DB by Nucleotide ID:NM_010002Re-query CCDS DB by Protein ID:NP_034132Link to BLAST:NP_034132.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034132.2 490 P56655 490 100% 0 0

Chromosomal Locations for CCDS 29794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39390931 39391112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39392149 39392290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39401606 39401793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39404661 39404802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39436054 39436230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39438214 39438374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39460263 39460412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39460577 39460739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39462887 39463054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGATCTTGTCACATTCCTGGTGCTCACTCTCTCCTCTCTCATTCTCCTCTCACTATGGAGACAGAGGT
CTAGAAGAGGGAGGCTCCCTCCTGGCCCCACTCCTTTCCCGATTATTGGTAATTTCCTTCAGATTGATGT
GAAGAACTTCAACCAATCCTTAACCAATTTCTCAAAAACCTATGGCCCCGTTTTCACTCTGTATTTGGGC
TCACGGCCCATTGTTGTATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGT
TTTCTGGTAGAGAAAACATCCCAATGTCTGAAAAGATTAATAATGGCCTTGGCATTACTTTTAGCAATGG
AAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAAC
ATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGGGCTCACCTT
GTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTT
TGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCC
CCATGGTTGCAGGTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTAC
TAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGT
TACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAGGCAAACCACATCGAACAAGCA
GAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCA
CAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAGCTAAAGTCCAAGAAGAGAT
TGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCC
ATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACA
TTAAATTCAGAAACTACATCATCCCCAAGGGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGA
CAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAG
AAAAGTGACTACTTCATGACTTTCTCAGCAGGAAAACGGGTTTGTGCTGGAGAGGGCCTGGCCCGCATGG
AGCTGTTTCTAATCCTGACCACCATTTTACAGAACTTTAAACTGAAATCTCTGGTTCACCCAAAAGACAT
TGATATGATCCCATTTGTGAATGGATTAATCACTCTGCCACCCCATTACCAGCTCTGCTTCATTCCTCTC
TAA

Translation (490 aa):
MDLVTFLVLTLSSLILLSLWRQRSRRGRLPPGPTPFPIIGNFLQIDVKNFNQSLTNFSKTYGPVFTLYLG
SRPIVVLHGYEAVKEALIDHGEEFSGRENIPMSEKINNGLGITFSNGNSWKETRRFTLMTLRNLGMGKRN
IEDRVREEAQCLVEELRKTKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMKKLNENVKILSS
PWLQVCNNFPLLIDYCPGSHHKVLKNFKYIRSYLLEKVKEHQESLDVTNPRDFIDYFLIKQKQANHIEQA
EYSLENLVCTINNLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVVGRHRSPCMQDRSRMPYTDA
MIHEVQRFINLVPNNLPHAVTCDIKFRNYIIPKGTTVVTSLTSVLHDSKEFPNPEMFDPGHFLDANGNFK
KSDYFMTFSAGKRVCAGEGLARMELFLILTTILQNFKLKSLVHPKDIDMIPFVNGLITLPPHYQLCFIPL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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