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Report for CCDS29740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29740.1 Public Mus musculus 19 Il33 23 108 98 CCDS HistoryNCBI Gene:77125Re-query CCDS DB by CCDS ID:29740.1Re-query CCDS DB by GeneID:77125See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025724.8 ENSMUSP00000025724.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025724.8Link to Ensembl Protein Viewer:ENSMUSP00000025724.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025724Re-query CCDS DB by Protein ID:ENSMUSP00000025724
Original member Current member EBI ENSMUST00000120388.8 ENSMUSP00000113829.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120388.8Link to Ensembl Protein Viewer:ENSMUSP00000113829.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120388Re-query CCDS DB by Protein ID:ENSMUSP00000113829
Original member Current member NCBI NM_001164724.2 NP_001158196.1 Accepted alive Link to Nucleotide Sequence:NM_001164724.2Link to Protein Sequence:NP_001158196.1Re-query CCDS DB by Nucleotide ID:NM_001164724Re-query CCDS DB by Protein ID:NP_001158196Link to BLAST:NP_001158196.1
Original member Current member NCBI NM_001360725.1 NP_001347654.1 Accepted alive Link to Nucleotide Sequence:NM_001360725.1Link to Protein Sequence:NP_001347654.1Re-query CCDS DB by Nucleotide ID:NM_001360725Re-query CCDS DB by Protein ID:NP_001347654Link to BLAST:NP_001347654.1
Original member Current member NCBI NM_133775.3 NP_598536.2 Accepted alive Link to Nucleotide Sequence:NM_133775.3Link to Protein Sequence:NP_598536.2Re-query CCDS DB by Nucleotide ID:NM_133775Re-query CCDS DB by Protein ID:NP_598536Link to BLAST:NP_598536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158196.1 266 Q8BVZ5 266 100% 0 0
NP_001347654.1 266 Q8BVZ5 266 100% 0 0
NP_598536.2 266 Q8BVZ5 266 100% 0 0

Chromosomal Locations for CCDS 29740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29949671 29949767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29951976 29952101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29952730 29952840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29954543 29954668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29955201 29955251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29956901 29956998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29958850 29959041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGAGACCTAGAATGAAGTATTCCAACTCCAAGATTTCCCCGGCAAAGTTCAGCAGCACCGCAGGCGAAG
CCCTGGTCCCGCCTTGCAAAATAAGAAGATCCCAACAGAAGACCAAAGAATTCTGCCATGTCTACTGCAT
GAGACTCCGTTCTGGCCTCACCATAAGAAAGGAGACTAGTTATTTTAGGAAAGAACCCACGAAAAGATAT
TCACTAAAATCGGGTACCAAGCATGAAGAGAACTTCTCTGCCTATCCACGGGATTCTAGGAAGAGATCCT
TGCTTGGCAGTATCCAAGCATTTGCTGCGTCTGTTGACACATTGAGCATCCAAGGAACTTCACTTTTAAC
ACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTAT
GTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAGACCAGGTGCTACTACGCTACTATGAGTCTC
CCTGTCCTGCAAGTCAATCAGGCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAA
AGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAGCTTCAAAGGGGTGACGTCTCG
CCTCCGGAACAGGCCTTCTTCGTCCTTCACAAAAAGTCCTCGGACTTTGTTTCATTTGAATGCAAGAATC
TTCCTGGCACTTACATAGGAGTAAAAGATAACCAGCTGGCTCTAGTGGAGGAGAAAGATGAGAGCTGCAA
CAATATTATGTTTAAGCTCTCGAAAATCTAA

Translation (266 aa):
MRPRMKYSNSKISPAKFSSTAGEALVPPCKIRRSQQKTKEFCHVYCMRLRSGLTIRKETSYFRKEPTKRY
SLKSGTKHEENFSAYPRDSRKRSLLGSIQAFAASVDTLSIQGTSLLTQSPASLSTYNDQSVSFVLENGCY
VINVDDSGKDQEQDQVLLRYYESPCPASQSGDGVDGKKLMVNMSPIKDTDIWLHANDKDYSVELQRGDVS
PPEQAFFVLHKKSSDFVSFECKNLPGTYIGVKDNQLALVEEKDESCNNIMFKLSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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