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Report for CCDS29736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29736.1 Public Mus musculus 19 Pdcd1lg2 23 108 98 CCDS HistoryNCBI Gene:58205Re-query CCDS DB by CCDS ID:29736.1Re-query CCDS DB by GeneID:58205See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112576.3 ENSMUSP00000108195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112576.3Link to Ensembl Protein Viewer:ENSMUSP00000108195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112576Re-query CCDS DB by Protein ID:ENSMUSP00000108195
Original member Current member EBI ENSMUST00000235164.1 ENSMUSP00000158422.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235164.1Link to Ensembl Protein Viewer:ENSMUSP00000158422.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235164Re-query CCDS DB by Protein ID:ENSMUSP00000158422
Original member Current member NCBI NM_021396.2 NP_067371.1 Accepted alive Link to Nucleotide Sequence:NM_021396.2Link to Protein Sequence:NP_067371.1Re-query CCDS DB by Nucleotide ID:NM_021396Re-query CCDS DB by Protein ID:NP_067371Link to BLAST:NP_067371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067371.1 247 Q9WUL5 247 100% 0 0

Chromosomal Locations for CCDS 29736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29422384 29422438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29437230 29437535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29445919 29446188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29454465 29454577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTGCTCCTGCTGCCGATACTGAACCTGAGCTTACAACTTCATCCTGTAGCAGCTTTATTCACCGTGA
CAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAG
AGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGT
GAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAG
TGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGT
GAAAGTCAAAGCTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAG
CTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACA
CCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAG
CAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTG
AGTCGGATGGAACCCAAAGTCCCCAGAACGTGGCCACTTCATGTTTTCATCCCGGCCTGCACCATCGCTT
TGATCTTCCTGGCCATAGTGATAATCCAGAGAAAGAGGATCTAG

Translation (247 aa):
MLLLLPILNLSLQLHPVAALFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS
ERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQ
LTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPL
SRMEPKVPRTWPLHVFIPACTIALIFLAIVIIQRKRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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